User friendly and accurate binder design pipeline
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Sep 21, 2026 - Jupyter Notebook
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pyrosetta
Here are 13 public repositories matching this topic...
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
jupyter-notebook dna rosetta rna-structure-prediction protein-design protein-folding protein-structure-prediction google-colab pyrosetta protein-docking
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Sep 19, 2026 - Jupyter Notebook
Automated, modular pipeline for de novo protein binder design on SLURM clusters, with the BFmonitor dashboard
deep-learning structural-biology slurm protein-design pyrosetta alphafold2 de-novo-protein-design rfdiffusion proteinmpnn protein-binders cnio
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Sep 23, 2026 - Python
RosettaDesign using PyRosetta
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Aug 22, 2019 - Python
Using Rotamer Interaction Fields from RIFGen/Dock in python
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May 2, 2021 - Python
Protein Structure prediction using Hybrid Differential Evolution (HybridDE)
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Apr 23, 2021 - Python
A Rosetta-based Python tool for constructing user-defined variant libraries with amino acid insertions, deletions, using loop closure algorithms and energy minimization.
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Jan 17, 2025 - Python
Method-independent benchmark of five de novo protein binder design tools on HPC
benchmark bioinformatics molecular-dynamics bioinformatics-pipeline gromacs protein-design pyrosetta bindcraft rfdiffusion boltzgen
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Sep 9, 2026 - Python
Structural bioinformatics pipeline for clustering antibody-antigen epitopes by geometric similarity and deriving consensus paratope design constraints for antibody engineering.
clustering protein-design structural-bioinformatics immunoinformatics antibodies protein-engineering pyrosetta epitope paratope sabdab
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Sep 27, 2026 - Python
Computes biophysical metrics from monomeric PDB structures for use as features in machine learning models.
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Aug 1, 2026 - C++
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