Issues

• Problem with lowres docking script hanging after a couple of decoys

  RosettaCommons/PyRosetta.notebooks#116 · Filter by author hannahlhargrove opened on Jul 2, 2026
  1

• Notebook 3.02 Typo

  RosettaCommons/PyRosetta.notebooks#113 · Filter by author brcarpen6 opened on Feb 5, 2026

• # Critical Bug: Segmentation Fault in MutateResidue on PyRosetta M1 (ARM) Build

  RosettaCommons/PyRosetta.notebooks#111 · Filter by author madsondeluna opened on Dec 4, 2025

• Kernel Die in FastRelax

  RosettaCommons/PyRosetta.notebooks#110 · Filter by author MichaelLaw2003 opened on Sep 2, 2025
  2

• ncAA-protein mutageneis scoring

  RosettaCommons/PyRosetta.notebooks#109 · Filter by author jbailey1933 opened on Aug 24, 2025

• Linking Pymol with Pyrosetta on windows 10 using UBUNTU

  RosettaCommons/PyRosetta.notebooks#108 · Filter by author Jacob199527 opened on Jun 30, 2025
  4

• what is the academic email

  RosettaCommons/PyRosetta.notebooks#107 · Filter by author winter123888 opened on Jun 14, 2025
  1

• Declare_chemical_bond between 2 SG atoms on the sidechain of 2 Cys residues

  RosettaCommons/PyRosetta.notebooks#106 · Filter by author lelaihoangson opened on Mar 13, 2025
  4

• Conda release of 2024.42+release.3366cf78a3-py311_0 requires GLIBC_2.27

  RosettaCommons/PyRosetta.notebooks#105 · Filter by author benkwolf opened on Dec 25, 2024

• An error in GALigandDock: ERROR: error! pharmacophore docking requires reference_pool to be as 'INPUT'!

  RosettaCommons/PyRosetta.notebooks#102 · Filter by author laviaf opened on Jun 17, 2024

• Inquiring regarding DNA model tutorial

  RosettaCommons/PyRosetta.notebooks#101 · Filter by author lxm1117 opened on Jun 8, 2024

• class RNA_DeNovoProtocolMover.de_novo_setup_from_command_line() or apply() can't run normally

  RosettaCommons/PyRosetta.notebooks#100 · Filter by author nadounadou opened on May 3, 2024
  1

• Request to add tutorial for building cyclic peptides

  RosettaCommons/PyRosetta.notebooks#99 · Filter by author astomer2 opened on Apr 16, 2024
  6

• Segmentation fault when importing ESMFold and Tokenizers from transformers along with Pyrosetta

  RosettaCommons/PyRosetta.notebooks#97 · Filter by author SIAndersson opened on Jan 31, 2024

• Why the mutation can not be executed thoroughly?

  RosettaCommons/PyRosetta.notebooks#93 · Filter by author JonasLi-19 opened on Sep 2, 2023
  2

• ERROR/warning when read pdb files

  RosettaCommons/PyRosetta.notebooks#91 · Filter by author SanFran-Me opened on Aug 23, 2023
  1

• Preparing Protein, cutoff of 1.5 REU, convert the REU to kcal/mol?

  RosettaCommons/PyRosetta.notebooks#90 · Filter by author ascusf opened on Jun 12, 2023

• How can I execute this command in pyrosetta?

  RosettaCommons/PyRosetta.notebooks#88 · Filter by author 404-xianjin opened on Jun 7, 2023
  3

• Running PyRosetta on Google Colab

  RosettaCommons/PyRosetta.notebooks#86 · Filter by author sv2530 opened on Apr 17, 2023
  2

• Unable to access the software, 401 unauthorized

  RosettaCommons/PyRosetta.notebooks#85 · Filter by author kylevaccaro4 opened on Jan 22, 2023
  1

• add acetylated N-terminus using pyrosetta

  RosettaCommons/PyRosetta.notebooks#83 · Filter by author ghost opened on Sep 16, 2022

• IndexError in Notebook 06.07 - Denovo Protein Design

  RosettaCommons/PyRosetta.notebooks#79 · Filter by author konradpaszkiewicz opened on Apr 25, 2022
  2

• How to customize the scoring function?

  RosettaCommons/PyRosetta.notebooks#78 · Filter by author HGX-001 opened on Apr 10, 2022

• Access data of the movements performed and if they were rejected or no

  RosettaCommons/PyRosetta.notebooks#75 · Filter by author robertoimuno opened on Jan 5, 2022

• please, give example of using snugdock from pyrosetta

  RosettaCommons/PyRosetta.notebooks#74 · Filter by author antonkulaga opened on Dec 22, 2021