prophage

Here are 9 public repositories matching this topic...

mtisza1 / Cenote-Taker2

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

virus annotation discovery genbank hhblits hhsearch metagenomes virome virus-discovery prophage hallmark virus-evolution cenote-taker2 prophage-prediction virus-sequences cenote-unlimited-breadsticks

Updated Jan 19, 2024
Shell

bobeobibo / phigaro

Star

Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

Updated Jan 8, 2024
HTML

WangLab-SCSIO / Prophage_Tracer

Star

Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

bioinformatics genomics ngs sequencing prophage prophage-prediction

Updated Oct 16, 2024
Shell

mtisza1 / Cenote_Unlimited_Breadsticks

Star

DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report

virus discovery prediction hidden-markov-model phage contigs virus-discovery prophage prophage-prediction unlimited-breadsticks

Updated Jan 19, 2024
Shell

nermze / MOSTAR

Star

Ont-only and Hybrid Assembly, Polishing, Annotation, AMR, Plasticity, prophage tracker, & ICE detection

bioinformatics annotation taxonomy assembly bioinformatics-pipeline amr illumina oxford-nanopore bioinformatics-tool prophage bioinformatics-pipelines ice-detection

Updated Aug 20, 2026
Shell

naturepoker / phaster_kits

Star

Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)

evolution virology phage prophage amateur-science phaster phage-research

Updated Mar 1, 2024
Shell

Strong-Lab / Prophage_in_NTM

Star

This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

virulence-factor ntm mycobacterium prophage prophages integrated-prophages

Updated Dec 16, 2020
Jupyter Notebook

skovgaard-ole / readrift

Star

Visualization of assembly errors, prophage induction and genomic variations by re-mapping long sequence reads

bioinformatics nanopore pacbio blast structural-variation prophage phase-variation

Updated Sep 10, 2026
Python

Qasim-Hussain-Code / p.aeruginosa-panimmunophagomics

Star

A comprehensive pan-immunophagomic analysis of Pseudomonas aeruginosa, characterizing CRISPR-Cas arrays, prophage integrations, and innate bacterial defense repertoires across diverse clinical isolates.

bioinformatics comparative-genomics virology pathogen-genomics resistome prophage pseudomonas-aeruginosa crispr-cas phage-defense bacteriophage pan-genomics viral-host-interaction immunophagomics

Updated Aug 4, 2026
Python

Add this topic to your repo

To associate your repository with the prophage topic, visit your repo's landing page and select "manage topics."

Learn more