phase-variation

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sachdevalab / MODIFI

MODIFI is for detecting DNA base modifications and linking ECEs to their microbial hosts using PacBio metagenomic data. It performs modification calling, motif discovery, and host–ECE association analysis, supporting both HiFi and subread data.

motif metagenomics borg dna-methylation ece plasmid phage mge epigenomics dna-modification pacbio-sequencing pacbio-hifi-sequencing-reads mge-host-linkage meta-epigenomics phase-variation ece-host-linkage

Updated Sep 11, 2026
Python

skovgaard-ole / readrift

Star

Visualization of assembly errors, prophage induction and genomic variations by re-mapping long sequence reads

bioinformatics nanopore pacbio blast structural-variation prophage phase-variation

Updated Sep 10, 2026
Python

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