Skip to content

Add TRAPPI protein complex record - #1124

Merged
realmarcin merged 2 commits into
mainfrom
add-trappi-protein-complex-record
Sep 17, 2026
Merged

realmarcin merged 2 commits into
mainfrom
add-trappi-protein-complex-record

Conversation

@realmarcin

Copy link
Copy Markdown
Contributor

Summary

  • add GO:1990070 TRAPPI protein complex as a new OTHER / MULTIPROTEIN_COMPLEX record
  • curate TRAPP I synonymy, GO:0030008 parentage, yeast Bet3/Bet5/Trs20/Trs23/Trs31/Trs33 core components, Saccharomyces cerevisiae scope, ER-to-Golgi vesicle transport function, and DOI-backed TRAPPI evidence
  • add a nonmechanistic yeast TRAPPI tethering graph plus discussions for unresolved subunit groundings and TRAPPI vs TRAPPII/TRAPPIII subtype boundaries
  • regenerate text embeddings, README corpus stats, and rendered pages

Validation

  • .venv/bin/python scripts/build_text_embedding_map.py --check
  • .venv/bin/python scripts/render_pages.py --check
  • .venv/bin/python scripts/check_docs.py --check
  • .venv/bin/linkml-validate -s src/cellstructuremech/schema/cellstructuremech.yaml -C CellStructureRecord data/structures/other/trappi_protein_complex.yaml
  • .venv/bin/python scripts/validate_strict.py --quiet data/structures/other/trappi_protein_complex.yaml
  • .venv/bin/python scripts/validate_strict.py --quiet
  • PATH="$PWD/.venv/bin:$PATH" .venv/bin/python scripts/validate_history.py history/records/trappi_protein_complex
  • PATH="$PWD/.venv/bin:$PATH" .venv/bin/python scripts/validate_history.py
  • .venv/bin/python scripts/fetch_snippets.py --verify --check
  • .venv/bin/python scripts/check_trait_links.py --check
  • .venv/bin/python scripts/check_curies.py --check --report reports/curie_check.tsv
  • .venv/bin/python scripts/validate_id_label_correspondence.py -c conf/id_label_targets.yaml
  • PATH="$PWD/.venv/bin:$PATH" .venv/bin/python scripts/run_qc.py
  • git diff --check

Copilot AI lite review requested due to automatic review settings September 16, 2026 20:16

Copilot AI left a comment

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Copilot was unable to review this pull request because the user who requested the review has reached their quota limit.

@realmarcin
realmarcin added this pull request to the merge queue Sep 16, 2026
@github-merge-queue
github-merge-queue Bot removed this pull request from the merge queue due to failed status checks Sep 16, 2026
@realmarcin
realmarcin added this pull request to the merge queue Sep 16, 2026
@github-merge-queue
github-merge-queue Bot removed this pull request from the merge queue due to failed status checks Sep 16, 2026
@realmarcin
realmarcin added this pull request to the merge queue Sep 16, 2026
@github-merge-queue
github-merge-queue Bot removed this pull request from the merge queue due to failed status checks Sep 16, 2026
@realmarcin
realmarcin added this pull request to the merge queue Sep 17, 2026
Merged via the queue into main with commit ecd73cc Sep 17, 2026
4 checks passed
@realmarcin
realmarcin deleted the add-trappi-protein-complex-record branch September 17, 2026 07:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants