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translational-efficiency

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Qasim-Hussain-Code / nf_core_ribo_seq_te_pipeline

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Paired RNA-seq/Ribo-seq analysis of translational efficiency changes under nitrogen limitation in an archaeon.

bioinformatics rna-seq genomics nextflow computational-biology deseq2 ribosome-profiling differential-expression archaea nf-core ribo-seq riborex translatomics translational-efficiency translational-control methanosarcina-mazei methanogen nitrogen-metabolism nitrogen-limitation xtail
  • Updated Sep 6, 2026
  • Python

Qasim-Hussain-Code / HCV_Riboseq

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A multi-omic bioinformatics pipeline interrogating viral translational hijacking in HCV-infected hepatoma cells. By integrating Ribosome Profiling and RNA-seq, it quantifies translational efficiency, maps ribosomal pause sites, and correlates translational stalling with RNA thermodynamic stability.

rna-seq thermodynamics rna-structure ribosome-profiling transcriptomics virology multi-omics ribo-seq hepatitis-c translational-efficiency structuromics
  • Updated May 8, 2026
  • Python

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