Integrative Composable Visualization Framework for ggplot2
forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer Archaeopteryx.
Plot tanglegrams from two dendrograms
R script for agglomerative hierarchical cluster analysis of bathymetric profiles: z-score scaling, Euclidean and correlation distance, average-linkage hclust, dendextend/magrittr dendrogram styling, tanglegram comparison and pvclust AU/BP bootstrap p-values. Mariana Trench; Lemenkova (2020), Carpathian JECE 13(1):5-12.
GUI and CLI workflow for phylogenetic tree construction, tanglegram comparison, and optional Foldseek protein-structure similarity.
Archaeopteryx — a desktop viewer for publication-quality phylogenetic tree figures
Python implementation of the Displacement-Optimized (DO) Tanglegram algorithm for phylogenetic trees
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