srna

TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy

Pipeline to carry out tasks common in the Hunt Lab on small RNA data

Align short RNA seqeuncing reads to determine the length of of overhang

Analysis workflow for smallRNA sequenced data

sRNAflow – a tool for analysis of small RNA-seq data

This is my final year project, where I used bioinfomatics tools to characterize RNA silencing for plant viruses in monocots.

Simple scripts to parallelize miRNA analysis with sRNAtoolbox performed for my Master thesis.

A comprehensive, user-friendly platform for small RNA-seq analysis — from raw FASTQ to differential expression and pathway enrichment.

Automated Differential Expression Pipeline for RNA-Seq Counts using DESeq2 or edgeR

Computational framework for discovery and classification of phased small RNA loci in plants.

MD thesis' project, where I performed an In silico target prediction for small ncRNAs in Mycobacterium tuberculosis

Run miRDeep-P2 multiple times in loop to to extract out large pool set of novel miRNAs from same input data and parameters

Small Trans-kingdom RNA Analysis Pipeline

TeeSnee is an algorithm designed to take high-dimensional gene expression data and represent it in low-dimensional space.

small RNA library processing and analysis

sTarML: A Sequence-Based Machine Learning Framework for Predicting Bacterial sRNA–mRNA Interactions