A reproducible QIIME 2 MOSHPIT pipeline that assembles, bins, dereplicates and taxonomically classifies whole‑metagenome data. Includes MEGAHIT assembly, MetaBAT 2 binning, BUSCO quality control, Sourmash dereplication and Kraken 2/Bracken abundance estimation. Ideal for microbial‑ecology, functional‑genomics and strain‑level profiling studies.
mag assembly metagenomics binning microbial-ecology qiime2 busco kraken2 bracken megahit shotgun-sequencing moshipt metabat2
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Updated
Jun 5, 2026 - Python