genrich

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Here are 3 public repositories matching this topic...

stjude-biohackathon / peakPeekeR

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Peak calling optimization via real time results assessment and interactive parameter adjustment.

shiny chip-seq atac-seq macs macs2 peak-calling cutandrun cutandtag genrich peak-callers sicer2

Updated Apr 29, 2022
R

CCBR / ASPEN

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CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲

multiqc ngs-pipeline macs2 atac-seq-pipeline genrich

Updated Sep 25, 2026
Python

addityea / nf-atac

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Yet another ATACseq pipeline written in Nextflow, but this one is different (so said everyone). See the DAG, if you prefer the components in this pipeline, give it a spin!

nextflow atacseq atacseqqc nextflow-pipeline genrich

Updated Apr 13, 2026
Nextflow

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