experimental-evolution

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

A simple package for simulations of microbial growth experiments with realistic sources of error.

PUBLICATION: High-throughput analysis of adaptation using barcoded strains of Saccharomyces cerevisiae

Papaver experiment with drought and competition treatment (University of Frankfurt)

Repo for: Chuong et al. (2024) DNA replication errors are a major source of adaptive gene amplification

Code for "Genetic background and thermal regime influence adaptation to novel environment in the seed beetle" (JEB, 2024)

Drosophila larval hemocyte single cell RNA-seq analysis pipeline

Experimental evolution and pooled sequencing analysis of antifungal adaptation in S. cerevisiae