The simplest repo for scGPT inference, finetuning and training.
-
Updated
Jul 14, 2026 - Python
#
aixbio
Here are 3 public repositories matching this topic...
Reference-free, privacy-preserving wastewater pathogen surveillance for federated hospital networks. DNABERT-2 embeddings + Transformer-encoder VAE detect emerging anomaly clusters in unclassified reads. AIxBio Hackathon Track 2, Apart Research.
bioinformatics deep-learning metagenomics public-health anomaly-detection variational-autoencoder hackathon-project federated-learning pathogen-detection biosecurity wastewater-surveillance pandemic-preparedness dnabert aixbio
-
Updated
Apr 29, 2026 - Jupyter Notebook
Investigation into ML explainability/interpretability techniques, analysing the behaviour of ML models trained to predict whether a medical abstract is or is not related to pathogens.
python nlp machine-learning scikit-learn transformers pytorch pubmed bag-of-words research-project bert lime interpretable-ai shap captum biosecurity model-explainability aixbio
-
Updated
Sep 4, 2026 - Jupyter Notebook
Add this topic to your repo
To associate your repository with the aixbio topic, visit your repo's landing page and select "manage topics."