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--igenomes_base could not validate file format #605

Description

@Blondeau-Bidet

Description of the bug

Hello,

When I run my job, I get the following error message: * --igenomes_base (s3://ngi-igenomes/igenomes/): could not validate file format of 's3://ngi-igenomes/igenomes/': Missing plugin 'nf-amazon' required to read file: s3://ngi-igenomes/igenomes/.
It seems this is a known issue: nextflow-io/nf-schema#204. But in practical terms, how can I work around the problem? My skills are fairly limited beyond the basic pipeline settings. Do you have any idea how long it might take to resolve this issue ?

Thank you

Command used and terminal output

nextflow run main.nf -profile singularity -c ${CONFIG} -ansi-log false \
--outdir /Results \
--input samplesheet_test.csv \
--fasta hap1.sm.fasta \
--em_seq \
--cytosine_report \
--multiQC_title EMseq_test

Relevant files

ERROR ~ Validation of pipeline parameters failed!

-- Check '.nextflow.log' file for details
The following invalid input values have been detected:

  • --igenomes_base (s3://ngi-igenomes/igenomes/): could not validate file format of 's3://ngi-igenomes/igenomes/': Unable to execute HTTP request: Network is unreachable

-- Check script 'subworkflows/nf-core/utils_nfschema_plugin/main.nf' at line: 68 or see '.nextflow.log' file for more details

System information

N E X T F L O W ~ version 25.04.4
Launching main.nf [nasty_borg] DSL2 - revision: c774a185d2
nf-core-methylseq_4.2.0
Container engine Singularity
Hardware HPC
Executor PBS

Activity

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