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update docker base image to have mariadb
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set to a specific checkout branch version tag of trinity
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predict: fix OOM + Pool.join() deadlock in soft-mask parsing of large…
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Docker: add scikit-learn/which to pixi env, create DB mount points, s…
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add deeptmhmm parsing as input to annotate step documentation
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add deeptmhmm parsing as input to annotate step documentation
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Merge pull request #1206 from nextgenusfs/add-deeptmhmm-parsing
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set more env variables and document how to use eggnog with container
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simplify smoke test
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ensure AVX2 toolset compiled bowtie are preset for those architecture…
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node.js 24 update
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fix which bash function problem introduced in latest debian
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add fungi as a standard install
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fix tagging/sign issue and node.js deprecation
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move to trixie for glibc bump
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Merge pull request #1192 from nextgenusfs/fable-review/library-py-fixes
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