OvCa_ChIP_seq

Analysis of OvCa ChIP-seq peaks (biofeature files and 2017 cell line panel)

Name		Name	Last commit message	Last commit date
IGV_sessions		IGV_sessions
hg19_H3K27ac_biofeature_beds		hg19_H3K27ac_biofeature_beds
hg19_H3K4me3_biofeature_beds		hg19_H3K4me3_biofeature_beds
hg38_H3K27ac_biofeature_beds		hg38_H3K27ac_biofeature_beds
hg38_H3K4me3_biofeature_beds		hg38_H3K4me3_biofeature_beds
peak_subsets		peak_subsets
.DS_Store		.DS_Store
.gitignore		.gitignore
Cell_Line_RNA_seq_2017_and_2018_FAIL_SAMPLES_REMOVED_featurecounts_matrix.csv		Cell_Line_RNA_seq_2017_and_2018_FAIL_SAMPLES_REMOVED_featurecounts_matrix.csv
H3K27ac_CCOC_consensus_upsetr_analysis.Rmd		H3K27ac_CCOC_consensus_upsetr_analysis.Rmd
H3K27ac_FTSEC_consensus_upsetr_analysis.Rmd		H3K27ac_FTSEC_consensus_upsetr_analysis.Rmd
H3K27ac_HGSOC_consensus_upsetr_analysis.Rmd		H3K27ac_HGSOC_consensus_upsetr_analysis.Rmd
H3K27ac_IOSE_consensus_upsetr_analysis.Rmd		H3K27ac_IOSE_consensus_upsetr_analysis.Rmd
H3K27ac_LGSOC_consensus_upsetr_analysis.Rmd		H3K27ac_LGSOC_consensus_upsetr_analysis.Rmd
H3K27ac_MOC_consensus_upsetr_analysis.Rmd		H3K27ac_MOC_consensus_upsetr_analysis.Rmd
OvCa_ChIP_seq.Rproj		OvCa_ChIP_seq.Rproj
README.md		README.md
active_promoter_analysis.Rmd		active_promoter_analysis.Rmd
hg19_GenesandGenePredictions_UCSC_Genes_knownGenes.txt		hg19_GenesandGenePredictions_UCSC_Genes_knownGenes.txt
hg19_TSS.bed		hg19_TSS.bed
hgsoc_con_genes_near_ap_df.txt		hgsoc_con_genes_near_ap_df.txt

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