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Research on protein-directed modification and redesign based on artificial intelligence technology.
The research content includes but is not limited to protein structure prediction and optimization, protein-directed modification, and design.

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  1. VenusFactory2 VenusFactory2 Public

    🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals. (ACL Demo2025, arXiv 2026)

    Python 255 37

  2. ProSST ProSST Public

    🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)

    Python 165 20

  3. VenusREM VenusREM Public

    🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)

    Python 148 14

  4. VenusFSFP VenusFSFP Public

    VenusFSFP: Few-Shot Protein Fitness Prediction

    Python 123 13

  5. ProtSSN ProtSSN Public

    🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2025).

    Python 97 10

  6. Pro-Prime Pro-Prime Public

    Jupyter Notebook 86 13

Repositories

Showing 10 of 21 repositories
  • .github Public
    ai4protein/.github's past year of commit activity
    Python 0 1 0 0 Updated Oct 23, 2026
  • ProDMM Public

    Source code of ProDMM. The paper is titled with "Unveiling Protein-DNA Interdependency: Harnessing Unified Multimodal Sequence Modeling, Understanding and Generation".

    ai4protein/ProDMM's past year of commit activity
    Python 10 GPL-3.0 1 1 0 Updated Oct 12, 2026
  • Venus-MAXWELL Public

    Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models

    ai4protein/Venus-MAXWELL's past year of commit activity
    Python 31 3 0 0 Updated Oct 8, 2026
  • ProSST Public

    🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)

    ai4protein/ProSST's past year of commit activity
    Python 165 20 13 0 Updated Sep 29, 2026
  • ProtSSN Public

    🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2025).

    ai4protein/ProtSSN's past year of commit activity
    Python 97 10 6 (1 issue needs help) 0 Updated Sep 29, 2026
  • VenusREM Public

    🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)

    ai4protein/VenusREM's past year of commit activity
    Python 148 14 16 1 Updated Sep 29, 2026
  • VenusREM-Harness Public

    A general harness enhances zero-shot fitness predition for any protein foundation model.

    ai4protein/VenusREM-Harness's past year of commit activity
    Python 8 0 0 0 Updated Sep 29, 2026
  • VenusFactory2 Public

    🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals. (ACL Demo2025, arXiv 2026)

    ai4protein/VenusFactory2's past year of commit activity
    Python 255 37 10 1 Updated Sep 25, 2026
  • VenusFold Public

    VenusFold

    ai4protein/VenusFold's past year of commit activity
    Python 16 0 0 0 Updated Sep 14, 2026
  • ai4protein.github.io Public

    Homepage

    ai4protein/ai4protein.github.io's past year of commit activity
    HTML 0 0 0 0 Updated Sep 2, 2026

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