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@UMCUGenetics

UMCU Genetics

Repository for genetics code

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  1. RNASeq-NF RNASeq-NF Public

    RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

    Nextflow 8 8

  2. NF-IAP NF-IAP Public

    Illumina Analysis Pipeline in Nextflow

    Nextflow 5 5

  3. NextflowModules NextflowModules Public

    UMCU Genetics Nextflow modules

    Nextflow 30 10

Repositories

Showing 10 of 161 repositories
  • clarity_epp Public

    Clarity LIMS epp scripts

    UMCUGenetics/clarity_epp's past year of commit activity
    Python 1 MIT 0 0 2 Updated Oct 26, 2026
  • CustomModules Public
    UMCUGenetics/CustomModules's past year of commit activity
    R 3 MIT 0 0 2 Updated Oct 26, 2026
  • DIMS Public

    Direct Infusion Mass Spectrometry pipeline

    UMCUGenetics/DIMS's past year of commit activity
    Nextflow 2 MIT 2 11 2 Updated Oct 23, 2026
  • DxNextflowFP Public

    Repo with scripts to process fingerprint data.

    UMCUGenetics/DxNextflowFP's past year of commit activity
    0 MIT 0 0 1 Updated Oct 16, 2026
  • GIABEval Public

    Genome-in-a-bottle evaluation tool to determine statistics

    UMCUGenetics/GIABEval's past year of commit activity
    Nextflow 2 MIT 0 0 2 Updated Oct 14, 2026
  • DxNextflowPG Public

    Repo with scripts to process pharmacogenetic data.

    UMCUGenetics/DxNextflowPG's past year of commit activity
    Nextflow 0 MIT 0 1 1 Updated Oct 14, 2026
  • dragen_utils Public

    Utility commands for pipelines using Illumina Dragen, bundled as a single installable package.

    UMCUGenetics/dragen_utils's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 12, 2026
  • DxNextflowPRS Public

    Nextflow Pipeline for Polygenic Risk Score calculations

    UMCUGenetics/DxNextflowPRS's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 7, 2026
  • NF-Modules Public
    UMCUGenetics/NF-Modules's past year of commit activity
    Nextflow 0 1 0 0 Updated Sep 29, 2026
  • USEQ_tools Public

    Utility scripts to work with Genologics Clarity LIMS

    UMCUGenetics/USEQ_tools's past year of commit activity
    Python 2 MIT 0 0 2 Updated Sep 29, 2026
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