Composable genomics in DuckDB, with R, the browser and agents as front ends
GenomicsETL
Composable genomics in DuckDB, with R, the browser and agents as front ends
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Showing 10 of 31 repositories
- duckhts Public template Forked from duckdb/extension-template-c
'htslib' based 'Duckdb' Extenstion for High Throughput Sequencing File Formats
- RGenomicsETL.r-universe.dev Public
- DuckVEP Public
Ensembl VEP consequence annotation as a resident, relation-first DuckDB extension, with HGVS, haplotypes and an R front end
- DuckClinVarbitration Public
Stream official ClinVar VCV XML releases into relational DuckDB evidence tables
- ducksemantics Public
- duckseq Public
Demos of one thesis: standard formats and DuckDB SQL over DuckHTS readers give the same answers as bespoke genomics tools, measured against each tool
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