Pennsieve

Vue 3 web app for Pennsieve workspaces: datasets, files, metadata, publishing and analysis workflows

Go Lambdas and a Fargate mover task behind the upload API: validates uploads against manifests, creates packages and moves files to storage

Go Lambda serving the /collections API: dataset collections with publishing, unpublishing and DOIs, backed by its own Postgres schema

Scala monorepo for the core Pennsieve API, admin, authorization and jobs ECS services, plus shared core models and clients used by other Scala services

Pennsieve Python client and CLI (PyPI package pennsieve), which talks to the local Pennsieve Agent for uploads and API access

Go data target for Pennsieve workflows (ECS task or Lambda) that uploads a processor's output files into a Pennsieve dataset

Vue 3 monorepo of Pennsieve data viewers (timeseries, OME-Zarr/TIFF, NIfTI, CSV, UMAP, Plotly) published as @pennsieve-viz packages, plus the orthogonal viewer site

Python reference writer and spec for TS-Zarr: converts neurophysiology time series into multiscale Zarr v3 bundles for streaming viewers

Lambda/Fargate dual-mode workflow processor that turns a data file and a plain-English prompt into a PNG figure via canned templates or an LLM-written script

Python workflow processor (Docker) converting Persyst EEG recordings (.lay/.dat) to NWB, keeping channels, segment gaps and annotations