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20 changes: 20 additions & 0 deletions docker-compose.yml
Original file line number Diff line number Diff line change
Expand Up @@ -754,6 +754,21 @@ services:
- ${WORK_DIR}/workflow_runner_exec:/app/work/workflow_runner_exec
- ${WORK_DIR}/workflow_runner_runs:/app/work/workflow_runner_runs
- ${WORK_DIR}/pathway_enrichment_runs:/app/work/pathway_enrichment_runs
# #529: Workflow Planner's and BioQueryAI's async (Celery) modes write
# their status.json/.ask_index here; this workbench container's own
# planner_ask_status/BioQueryAI polling handlers read from the same
# /app/work/planner and /app/work/bioqueryai paths. Neither was a
# shared volume before this fix -- every OTHER async-completion path
# bio_agent uses (runs/objects/workflow_runner_exec/
# workflow_runner_runs/pathway_enrichment_runs, all already above) IS
# shared between workbench and celery-worker; these two specifically
# were not, so celery-worker's completion was permanently invisible
# to workbench's polling endpoint (confirmed via issue #529: the task
# genuinely completes and writes status.json inside celery-worker,
# but workbench's filesystem never has the file, or even the parent
# directory, at all).
- ${WORK_DIR}/planner:/app/work/planner
- ${WORK_DIR}/bioqueryai:/app/work/bioqueryai
# #265: proxy's exposed socket, not the raw host one -- see the
# docker-socket-proxy service above and DOCKER_HOST in
# environment: above. :ro because workbench only ever needs to
Expand Down Expand Up @@ -886,6 +901,11 @@ services:
- ${WORK_DIR}/workflow_runner_exec:/app/work/workflow_runner_exec
- ${WORK_DIR}/workflow_runner_runs:/app/work/workflow_runner_runs
- ${WORK_DIR}/pathway_enrichment_runs:/app/work/pathway_enrichment_runs
# #529: this is where the Celery tasks that actually run in THIS
# container write their status.json/.ask_index -- see the matching
# comment on workbench's volumes: above for the full rationale.
- ${WORK_DIR}/planner:/app/work/planner
- ${WORK_DIR}/bioqueryai:/app/work/bioqueryai
# #54: proxy's exposed socket, not the raw host one -- see
# DOCKER_HOST in environment: above. :ro because celery-worker
# only ever needs to *connect to* this socket file, never write
Expand Down
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