Issues

• Apply correction to TFCE and derivative expressions

  buggood first issue
  Bug

  MRtrix3/mrtrix3#3447 · Filter by author Lestropie opened on Oct 5, 2026

• Further code base standardisation

  code quality
  Task

  MRtrix3/mrtrix3#3445 · Filter by author Lestropie opened on Sep 23, 2026

• Introduce value_or() for std::map

  code quality
  MRtrix3/mrtrix3#3444 · Filter by author Lestropie opened on Sep 16, 2026

• population_template: Check for zero-filling

  wishlist
  Feature

  MRtrix3/mrtrix3#3442 · Filter by author Lestropie opened on Sep 14, 2026

• mrregister: Better mask handling for non-linear updates

  wishlist
  Feature

  MRtrix3/mrtrix3#3441 · Filter by author Lestropie opened on Sep 14, 2026

• population_template: Non-linear drift correction

  wishlist
  Feature

  MRtrix3/mrtrix3#3440 · Filter by author Lestropie opened on Sep 14, 2026

• Noise map scaling to match DWIs

  enhancementgood first issuescriptswishlist
  MRtrix3/mrtrix3#3438 · Filter by author Lestropie opened on Sep 10, 2026

• Improve smoothing in presence of non-finite values

  wishlist
  MRtrix3/mrtrix3#3437 · Filter by author Lestropie opened on Sep 9, 2026

• Flag skipped Python command tests

  CI/testsscripts
  MRtrix3/mrtrix3#3435 · Filter by author Lestropie opened on Aug 26, 2026

• [mrconvert]: -export_grad_fsl silently exports gradients inconsistent with on-disk image axes

  MRtrix3/mrtrix3#3431 · Filter by author Rad-dude opened on Aug 7, 2026

• Remove VLA on dev?

  code qualityquestion
  MRtrix3/mrtrix3#3421 · Filter by author Lestropie opened on Jul 18, 2026

• ENH mrview: Improved tractogram rendering with transparency

  guiwishlist
  MRtrix3/mrtrix3#3416 · Filter by author Lestropie opened on Jul 1, 2026

• Expedite / guarantee offline build

  buildCI/tests
  MRtrix3/mrtrix3#3413 · Filter by author Lestropie opened on Jun 22, 2026 · 3.1.0-RC1 milestone

• Move Python-related config file & envvar entries

  documentationPython APIwishlist
  MRtrix3/mrtrix3#3411 · Filter by author Lestropie opened on Jun 21, 2026

• CLI queries for AI

  wishlist
  MRtrix3/mrtrix3#3398 · Filter by author Lestropie opened on Jun 8, 2026

• Restore GPU compilation on Windows

  buildCI/testsWindows
  MRtrix3/mrtrix3#3385 · Filter by author Lestropie opened on Jun 3, 2026 · 3.1.0-RC1 milestone

• Merges to master

  meta
  MRtrix3/mrtrix3#3373 · Filter by author Lestropie opened on May 27, 2026
  

• mrdump: Fixed order

  MRtrix3/mrtrix3#3363 · Filter by author Lestropie opened on May 17, 2026

• warpcorrect: Detect non-constant triplet fill values

  wishlist
  MRtrix3/mrtrix3#3362 · Filter by author Lestropie opened on May 17, 2026

• transformconvert: Support binary ITK affine transform

  enhancementwishlist
  MRtrix3/mrtrix3#3360 · Filter by author Lestropie opened on May 16, 2026

• Conversion between text files and images

  enhancementwishlist
  MRtrix3/mrtrix3#3358 · Filter by author Lestropie opened on May 15, 2026

• New command: tsfconvert

  wishlist
  MRtrix3/mrtrix3#3357 · Filter by author Lestropie opened on May 15, 2026

• CLI: Add extension checking to file paths

  wishlist
  MRtrix3/mrtrix3#3333 · Filter by author Lestropie opened on May 1, 2026
  2

• Add Markdown files for AI

  wishlist
  MRtrix3/mrtrix3#3332 · Filter by author Lestropie opened on Apr 30, 2026
  1

• ENH fixelreorient: Support linear transform

  enhancementwishlist
  MRtrix3/mrtrix3#3325 · Filter by author Lestropie opened on Apr 26, 2026