avo_ref_paper

Scripts for the Avocado reference genome paper

G3 Paper supplementary tables:

Gwen Scaffold Type A vs B Top and Bottom 1% Coverage Deltas for Genes Mapped with SwissProt IDs
Gwen Scaffold Type A vs B 20kb Window Analysis Top 1% FST with Genes Mapped with SwissProt Matches
Gwen Scaffold Type A vs B 20kb Window Analysis Top 1% FST with Genes Mapped with UniRef90 Matches
Gwen Scaffold Guatemalan varities only Type A vs B 20kb Window Analysis Top 1% FST with Genes Mapped with SwissProt Matches
Gwen Scaffold Guatemalan varities only Type A vs B 20kb Window Analysis Top 1% FST with Genes Mapped with UniRef90 Matches
Gwen Type A vs B Genes in top 1% Fst Windows GO Enrichment