When loading the OMOP vocabulary tables into DuckDB database, the drug strength table is completely avoided.
The problem is here in the function
|
# "DRUG_STRENGTH", TEMP: loading makes error, leave out at the moment |
This function is being using to load the files in FinOMOP_mappings git repo
https://github.com/FinOMOP/FinOMOP_mappings/blob/6c1e26109f6b78135a29c72108dad4765f0c3543/dev/scripts/runAllBase.R#L25-L29
The function needs to be fixed to load drug strength table
When loading the OMOP vocabulary tables into DuckDB database, the drug strength table is completely avoided.
The problem is here in the function
ROMOPMappingTools/R/databasesFromAndToCSV.R
Line 27 in ed54f1c
This function is being using to load the files in FinOMOP_mappings git repo
https://github.com/FinOMOP/FinOMOP_mappings/blob/6c1e26109f6b78135a29c72108dad4765f0c3543/dev/scripts/runAllBase.R#L25-L29
The function needs to be fixed to load drug strength table