Issues

• In 1.5.0, solver from config is ignored

  FRED-2/OptiType#157 · Filter by author Anastasiabum opened on Jul 8, 2026

• Optitype drops most reads for HLA typing from targeted sequencing panel WES

  FRED-2/OptiType#156 · Filter by author das2000sidd opened on Jul 3, 2026

• Updating the HLA definitions

  FRED-2/OptiType#155 · Filter by author afw-code opened on Jul 1, 2026

• uint16 problem

  FRED-2/OptiType#153 · Filter by author mromanov2001 opened on May 14, 2026
  1

• Mouse WES

  FRED-2/OptiType#150 · Filter by author dincerkilic opened on Oct 2, 2024

• OptiType Fails to Open Intermediate BAM File

  FRED-2/OptiType#149 · Filter by author valeriaMCuevas opened on Sep 10, 2024

• IOError: [Errno 2] could not open alignment file

  FRED-2/OptiType#148 · Filter by author lukaas33 opened on Jul 31, 2024

• HLA typing 10x scRNA-seq data with Optitype

  FRED-2/OptiType#141 · Filter by author Githubuser3838 opened on Oct 11, 2023
  2

• this team is no longer maintained

  FRED-2/OptiType#140 · Filter by author SunYong0821 opened on Oct 10, 2023
  1

• Maximal read length of 0 bps exceeded

  FRED-2/OptiType#137 · Filter by author frankligy opened on May 3, 2023

• ValueError: too many values to unpack

  FRED-2/OptiType#136 · Filter by author szabolcstarapcsak opened on Apr 24, 2023

• error using docker

  FRED-2/OptiType#132 · Filter by author anoronh4 opened on Aug 24, 2022
  1

• output file column description

  FRED-2/OptiType#131 · Filter by author cjieming2 opened on May 31, 2022

• OptiType returns ValueError with some samples while running just fine with others

  FRED-2/OptiType#129 · Filter by author isinaltinkaya opened on May 17, 2022

• what about MICA MICB typing

  FRED-2/OptiType#127 · Filter by author dingying85 opened on Mar 22, 2022
  1

• Optitype fails to run silently and does not generate the resulting TSV file

  FRED-2/OptiType#126 · Filter by author b-niu opened on Mar 2, 2022

• Optitype memory error in v1.3.5 due to pandas' reindex

  FRED-2/OptiType#125 · Filter by author jnktsj opened on Feb 8, 2022
  3

• conda installation issue

  FRED-2/OptiType#123 · Filter by author OrielResearchCure opened on Feb 7, 2022

• conda installation issue

  FRED-2/OptiType#124 · Filter by author OrielResearchCure opened on Feb 7, 2022
  1

• Updated Docker version

  FRED-2/OptiType#121 · Filter by author YingYa opened on Apr 28, 2021

• OptiType killed OOM

  FRED-2/OptiType#120 · Filter by author Akazhiel opened on Jan 19, 2021
  4

• How to deal with tumor-only samples?

  FRED-2/OptiType#119 · Filter by author qindan2008 opened on Nov 20, 2020

• IOError: [Errno 2] could not open alignment file

  FRED-2/OptiType#116 · Filter by author dstueckm opened on Sep 3, 2020
  6

• AttributeError: 'Index' object has no attribute 'difference'

  FRED-2/OptiType#115 · Filter by author renyuan01 opened on Sep 3, 2020
  2

• Commands for Singularity Bootstrap of Docker Image

  FRED-2/OptiType#114 · Filter by author ilovesquishy opened on Aug 27, 2020
  1