Skip to content

Bump nf-core/setup-nextflow from 2 to 3 - #97

Open
dependabot[bot] wants to merge 1 commit into
devfrom
dependabot/github_actions/dev/nf-core/setup-nextflow-3
Open

Bump nf-core/setup-nextflow from 2 to 3#97
dependabot[bot] wants to merge 1 commit into
devfrom
dependabot/github_actions/dev/nf-core/setup-nextflow-3

Conversation

@dependabot

@dependabot dependabot Bot commented on behalf of github Aug 27, 2026

Copy link
Copy Markdown
Contributor

Bumps nf-core/setup-nextflow from 2 to 3.

Release notes

Sourced from nf-core/setup-nextflow's releases.

v3.0.0

Breaking Change

  • Upgraded Node.js version from 20 to 24 (#219)

Added

  • secrets input to set Nextflow secrets (KEY=VALUE format, one per line) (#202)
  • Test to verify /dist is up-to-date
  • Pull request template
  • Contributing documentation

Changed

  • Updated ESLint to v9 with flat config format
  • Migrated codebase to ES Modules (ESM)
  • Simplified action.yml by flattening the composite action structure
Changelog

Sourced from nf-core/setup-nextflow's changelog.

[3.0.1] - 2026-07-21

Fixed

  • Resolve fully specified Nextflow versions without relying on nf-core metadata (#242)
  • Preserve archive selection across the Nextflow 24.10.0 distribution boundary (#242)
  • Report malformed or incomplete nf-core metadata with actionable errors (#242)

[3.0.0] - 2024-04-17

Breaking Change

  • Upgraded Node.js version from 20 to 24 (#219)

Added

  • secrets input to set Nextflow secrets (KEY=VALUE format, one per line) (#202)
  • Test to verify /dist is up-to-date
  • Pull request template
  • Contributing documentation

Changed

  • Updated ESLint to v9 with flat config format
  • Migrated codebase to ES Modules (ESM)
  • Simplified action.yml by flattening the composite action structure

[2.1.4] - 2024-12-05

  • Fix ref handling in nested GitHub Actions

[2.1.3] - 2024-12-05

  • remove unnecessary build step

[2.1.2] - 2024-12-05

  • Fix checkout step in main action.yml

[2.1.1] - 2024-12-05

  • Don't print nextflow help output by default, only on debug mode (#173)

[2.1.1] - 2024-12-05

  • Add checkout step to main action.yml (#178)

[2.1.0] - 2024-12-04

Changed

... (truncated)

Commits

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Bumps [nf-core/setup-nextflow](https://github.com/nf-core/setup-nextflow) from 2 to 3.
- [Release notes](https://github.com/nf-core/setup-nextflow/releases)
- [Changelog](https://github.com/nf-core/setup-nextflow/blob/master/CHANGELOG.md)
- [Commits](nf-core/setup-nextflow@v2...v3)

---
updated-dependencies:
- dependency-name: nf-core/setup-nextflow
  dependency-version: '3'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Aug 27, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code

Projects

None yet

Development

Successfully merging this pull request may close these issues.

0 participants