Problem
The AbiZ graph in PR #961 has this edge:
subject: premature_infected_cell_lysis
predicate: mitigates
predicate_id: METPO:2007407
object: restricted_phage_propagation
That reads as “premature infected-cell lysis mitigates restricted phage propagation,” which inverts the intended biology. The evidence and edge description support premature AbiZ-associated lysis limiting phage production and therefore contributing to restricted P335 phage propagation.
Fix
Use the neutral process-support relation already used by the neighboring Abi family graphs:
subject: premature_infected_cell_lysis
predicate: contributes to
predicate_id: RO:0002326
object: restricted_phage_propagation
Update both the generated data/traits/genomics/abiz_system.yaml record and scripts/add_abiz_system_trait.py, then rerun focused validation and regenerated artifacts.
Found By
Local adversarial review of PR #961.
Problem
The AbiZ graph in PR #961 has this edge:
That reads as “premature infected-cell lysis mitigates restricted phage propagation,” which inverts the intended biology. The evidence and edge description support premature AbiZ-associated lysis limiting phage production and therefore contributing to restricted P335 phage propagation.
Fix
Use the neutral process-support relation already used by the neighboring Abi family graphs:
Update both the generated
data/traits/genomics/abiz_system.yamlrecord andscripts/add_abiz_system_trait.py, then rerun focused validation and regenerated artifacts.Found By
Local adversarial review of PR #961.