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Add AR Bank 0033 ceftazidime resistance - #419

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realmarcin merged 1 commit into
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curate/arbank-ceftazidime-0033
Sep 18, 2026
Merged

realmarcin merged 1 commit into
mainfrom
curate/arbank-ceftazidime-0033

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Summary

  • added CDC/FDA AR Isolate Bank Panel 1227 isolate 0033 as an Acinetobacter baumannii ceftazidime-resistant activity observation
  • normalized the AR Bank >128 micrograms/mL ceftazidime MIC to mic_value: 128.0, mic_qualifier: '>', and mic_units: mg/L
  • preserved Study ID CarbaNP-02, BioSample SAMN04014874, source Unknown, and MLST ST85(Pasteur), ST1089(Oxford) in the evidence notes
  • regenerated the ceftazidime rendered page

Validation

  • .venv/bin/python /private/tmp/review_arbank_ceftazidime_1227_0033.py
  • .venv/bin/python scripts/validate_strict.py data/antibiotics/antibacterial/ceftazidime.yaml --out /tmp/antibioticmech-resistant-taxa-validation.tsv
  • .venv/bin/python scripts/verify_corpus.py
  • git diff --check
  • env -u PYTHONPATH /private/tmp/antibioticmech-rdkit-20260916-qc/bin/python scripts/run_qc.py

Copilot AI lite review requested due to automatic review settings September 18, 2026 02:02

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🟢 Approval recommended

No unresolved issues remain in the reviewed changes.

Pull request overview

Adds CDC/FDA AR Isolate Bank isolate 0033 as a ceftazidime-resistant A. baumannii observation with normalized MIC data and regenerated documentation.

Changes:

  • Adds validated >128 mg/L MIC, provenance, and isolate metadata.
  • Records the curation history.
  • Regenerates the ceftazidime rendered page.
File summaries
File Description
pages/antibacterial/ceftazidime.html Renders the new observation and curation history.
data/antibiotics/antibacterial/ceftazidime.yaml Adds the validated resistance observation and provenance.
Review details
  • Files reviewed: 2/2 changed files
  • Comments generated: 0
  • Review effort level: Lite

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@realmarcin
realmarcin added this pull request to the merge queue Sep 18, 2026
Merged via the queue into main with commit 77db582 Sep 18, 2026
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@realmarcin
realmarcin deleted the curate/arbank-ceftazidime-0033 branch September 18, 2026 02:26
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2 participants