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Merge pull request #46 from CompOmics/feat/sensitivity-improvements
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Merge pull request #45 from CompOmics/feat/sensitivity-improvements
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Merge pull request #44 from CompOmics/feat/sensitivity-improvements
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fix(mokapot): score all PSMs incl decoys; parallelize CV folds
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docs: treat target-decoy FDR as the trusted estimate
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feat(run): optional DeepLC multitask fine-tune of iRT
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feat(run): library-input mode to consume a prebuilt DIA-NN speclib
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docs: PowerShell mount syntax for the Docker run command
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fix(docker): python 3.11 sidecar envs to avoid pandas source builds
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feat(docker): self-contained image bundling engine + all sidecars
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feat(deploy): mumdia doctor + dormant prebuilt-binary release workflo…
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feat(run): preflight validation before compute (Phase 1)
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feat(report): human-readable peptides.tsv / proteins.tsv from run (Ph…
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