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when subsetting a MSImagingExperiment based on pData (like in subset <- HnE_annot[,pData(HnE_annot)$HnE_annot== annot]), the resulting field of view is cropped (if annot defines an inner/smaller region of the data).
It would be great to have the option to pass xlim and ylim (or analogous param) to either subsetPixels() or sliceImage() so that x and y lims can be manually defined or inherited from the full dataset (HnE_annot in this dummy example).
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kuwisdelu commentedon Oct 9, 2025
This could make sense for
sliceImage().