compute peak statistics when aligning to a known reference #53

Hi,

when processing using a ref peak (ie when using peakProcess()) it would be nice to compute the stats (ie counts, freq) or at least include an option to do so?

thanks!

mse <- simulateImage(preset=1, npeaks=10, dim=c(3,3))
mse2 <- peakProcess(mse,
ref = mz(mse)[1:30],
method=“diff”,
SNR=6,
sampleSize=0.3,
filterFreq=0.02)

mse2
MSImagingExperiment with 30 features and 9 spectra
spectraData(1): intensity
featureData(1): mz
pixelData(4): x, y, run, circle
coord(2): x = 1...3, y = 1...3
runNames(1): run0
metadata(2): design, processing_20241117091510
mass range: 655.1111 to 662.7546
centroided: TRUE