Feature/grace wasserstein uncertainty bootstrap - #2

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feature/grace-wasserstein-uncertainty-bootstrap

Commits on Jan 27, 2026

added header info for bootstrapping pproach
graxia0322
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ff4f9bc
added function to extract each replicate CDF for a condition
graxia0322
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13755d5
add functions for resampling replicates, pooling and W1 calc for a single formulation first
graxia0322
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5a7fc0c
added main function for resampling analysis for all formulations
graxia0322
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beaa2b8
Added function for effect-to-noise ratio calculation
graxia0322
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e8d313f
added functions for visualization, auto-execution and auto-saving results
graxia0322
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29a0e9a
attempt to sync
graxia0322
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dd71a6a
added missing '#' throwing syntax error
graxia0322
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1a21a81
fixed syntax error
graxia0322
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649c680

Commits on Jan 28, 2026

Commits on Jan 29, 2026

Commits on Feb 2, 2026

Commits on Feb 3, 2026

Replace library(tidyverse) with explicit namespaces
Ashbrunaugh
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a4f398d
remove auto-run feature for public-facing code
Ashbrunaugh
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c463a92
fix pathlinks
Ashbrunaugh
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6e4257e
Remove %>% dependency by switching to native R pipe (|>)
Ashbrunaugh
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f1b327e
Remove %>% dependency by switching to native R pipe (|>)
Ashbrunaugh
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43ececa
Fix device_resistance filter bug in replicate pooling
Ashbrunaugh
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99f53e7
remove normalization (w1/d50) functions
Ashbrunaugh
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802ce51
Remove DoE wording from Wasserstein output messages
Ashbrunaugh
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c7c9a4b
Define replicate identity explicitly by column header
Ashbrunaugh
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546ae19
Add grid alignment via interpolation before W1 integration
Ashbrunaugh
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3336f90
updated file paths to match 01 and 02 outputs
Ashbrunaugh
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a82e55c
remove autorun feature and add example to header
Ashbrunaugh
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e1c0b8a
update pathlinks in example
Ashbrunaugh
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969aae0
Refactor visualization functions 1–3 to remove library() dependencies
Ashbrunaugh
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f3f6d62
delete density distribution psd plot
Ashbrunaugh
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b4fa9ec
remove d50 comparison plot function
Ashbrunaugh
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130ef0f
fix name spacing in Function 4-7 (grace's new functions)
Ashbrunaugh
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0397b18
delete publication_ready_plot function
Ashbrunaugh
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0586960
refactor(viz): add atomic reference-vs-test plotter and pairwise PDF exporter
Ashbrunaugh
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83775fb
Refactor formulation plots to pairwise reference–test PDF exports
Ashbrunaugh
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43d0a5e
Fix condition filtering in pairwise PDF exporter
Ashbrunaugh
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980e888
Fix reference vs test color mapping in pairwise CDF plots
Ashbrunaugh
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743c082
correct to make replicate pooling logic match the 02 script
Ashbrunaugh
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242639b
Update overlay plotting to generate per-formulation reference + INHALER PDFs
Ashbrunaugh
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219d3ef
updated header for CDF plot changes
Ashbrunaugh
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044175c
Add per-formulation reference + all-test overlay exporter with replicate-first pooling
Ashbrunaugh
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0fcb988
remove extra CDF plot functions (redundant)
Ashbrunaugh
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18f794e
chore: remove deprecated QC plots from generate_all_plots()
Ashbrunaugh
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dff04c0
updated header to match what is being plotted
Ashbrunaugh
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9c87aed
Checkpoint: W1 plots verified before dynamic faceting refactor
Ashbrunaugh
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db3611e
added verbose output to terminal output to explain logic
Ashbrunaugh
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526d345
updated headers to distinguish different functions
Ashbrunaugh
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5aa669a
remove references to _v2 in file paths
Ashbrunaugh
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1f9a16e
remove auto_run behavior
Ashbrunaugh
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9d0629c
add supplementary caution note to header
Ashbrunaugh
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1792f25
add further safeguard against autorun
Ashbrunaugh
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9f21b02
move into supplementary/scripts
Ashbrunaugh
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fc5ca46
Create README.md
Ashbrunaugh
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9b00daa