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24 changes: 24 additions & 0 deletions CITATION.cff
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cff-version: 1.2.0
title: ScreenPro2
message: >-
If you use this software, please cite the associated publication below.
authors:
- family-names: O'Loughlin
given-names: Timothy A.
- family-names: Arab
given-names: Abolfazl
- family-names: Gilbert
given-names: Luke A.
preferred-citation:
type: article
title: Chemogenomic maps reveal a PRDX1-dependent iron–damage axis in the DNA damage response
authors:
- family-names: O'Loughlin
given-names: T.A.
- family-names: Arab
given-names: A.
- family-names: Gilbert
given-names: L.A.
journal: Nature Chemical Biology
year: 2026
doi: 10.1038/s41589-026-02312-z
15 changes: 9 additions & 6 deletions README.md
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[![website](https://img.shields.io/badge/website-live-brightgreen)](https://arcinstitute.org/tools/screenpro2)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18807934.svg)](https://doi.org/10.5281/zenodo.18807934)
[![zenodo](https://zenodo.org/badge/DOI/10.5281/zenodo.18807934.svg)](https://doi.org/10.5281/zenodo.18807934)
[![NCB](https://img.shields.io/badge/DOI-10.1038%2Fs41589--026--02312--z-blue.svg)](https://doi.org/10.1038/s41589-026-02312-z)
[![PyPI version](https://badge.fury.io/py/ScreenPro2.svg)](https://badge.fury.io/py/ScreenPro2)
[![Documentation Status](https://readthedocs.org/projects/screenpro2/badge/?version=latest)](https://screenpro2.readthedocs.io/en/latest/?version=latest)
[![Downloads](https://static.pepy.tech/badge/screenpro2)](https://pepy.tech/project/screenpro2)
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by Abolfazl (Abe) Arab ([@abearab](https://github.com/abearab)) as a Research Associate in the Gilbert lab at UCSF and Arc Institute.

## Citation
If you use ScreenPro2 in your research, please cite the following paper.
If you use ScreenPro2 in your research, please cite both the software release and the published paper.

Coming soon...
**Final publication note**: The final ScreenPro2 publication is now available in _Nature Chemical Biology_ (2026): https://doi.org/10.1038/s41589-026-02312-z

- **Software (Zenodo)**:
> Arab, A., et al. ArcInstitute/ScreenPro2. _Zenodo_ (2026). https://doi.org/10.5281/zenodo.18884467

## Development
### Testing
Tests can be easily run using the `pytest` framework.
- **Paper (Nature Chemical Biology)**:
> O’Loughlin, T.A., Arab, A., et al. **Chemogenomic maps reveal a PRDX1-dependent iron–damage axis in the DNA damage response.** _Nat Chem Biol_ (2026). https://doi.org/10.1038/s41589-026-02312-z
2 changes: 1 addition & 1 deletion pyproject.toml
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[tool.poetry]
name = "ScreenPro2"
description = "Flexible analysis of high-content CRISPR screening"
version = "0.6.1"
version = "0.7.0"
authors = [
"Abolfazl Arab <abolfazl.arab@ucsf.edu>",
"Nick Youngblut <nick.youngblut@arcinstitute.org>",
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