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ABOHKOF/README.md

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Richmond Koffi

Bioinformatics | Multi-omics engineering in health

Master's degree in Bioinformatics (Université Paris-Est Créteil, UPEC). I work on RNA-seq and spatial transcriptomics analysis applied to biomedical research, most recently on macrophages in chronic kidney disease at CRI - Centre de Recherche sur l'Inflammation.

Focus: bulk & single-cell RNA-seq · spatial transcriptomics · NGS data analysis

Tools: R/RStudio · Python · DESeq2 · Seurat · cell2location · CellChat

Based in Île-de-France, France · Open to bioinformatics opportunities

LinkedIn: https://www.linkedin.com/in/richmond-koffi-344922173

Featured projects

spatial-analysis-macrophages-CKD: spatial transcriptomics of macrophages in chronic kidney disease — cell2location deconvolution, CellChat cell-cell communication, differential expression and co-expression analysis.

analyse-RNAseq-DESeq2: DESeq2 pipeline for bulk RNA-seq differential expression — normalization, PCA, heatmaps, volcano plots and GO enrichment.

Repartition-Cell: single-cell RNA-seq analysis (Seurat) of immune cell subsets — clustering, UMAP and cell proportion comparison.

Skills

R Python Jupyter Git

Popular repositories Loading

  1. analyse-RNAseq-DESeq2 analyse-RNAseq-DESeq2 Public

    DESeq2 pipeline for bulk RNA-seq differential expression: normalization, PCA, heatmaps, volcano plots and GO enrichment analysis in R (macrophage stimulation dataset).

  2. Repartition-Cell Repartition-Cell Public

    Single-cell RNA-seq analysis (Seurat) of immune cell subsets: normalization, clustering, UMAP visualization and cell proportion comparison across conditions/patients.

  3. spatial-analysis-macrophages-CKD spatial-analysis-macrophages-CKD Public

    Spatial transcriptomics analysis of macrophages in chronic kidney disease (CKD): cell2location deconvolution, CellChat cell-cell communication, differential expression and co-expression analysis (P…

    Jupyter Notebook

  4. ABOHKOF ABOHKOF Public