Issues

• Thousands of FutureWarnings with pandas 2.2.3

  kusterlab/SIMSI-Transfer#32 · Filter by author MatthewThe opened on Sep 10, 2025

• Fragpipe

  kusterlab/SIMSI-Transfer#30 · Filter by author cutleraging opened on Apr 7, 2025
  3

• Raise error when MS3 quan is selected but there are no MS3 spectra found for (some) raw files

  kusterlab/SIMSI-Transfer#28 · Filter by author fhamood opened on Apr 4, 2024

• NaNs in Mass column for transfers results

  kusterlab/SIMSI-Transfer#25 · Filter by author MatthewThe opened on Dec 14, 2023

• Example Datasets do not contain allPeptides.txt files

  kusterlab/SIMSI-Transfer#23 · Filter by author fhamood opened on Dec 21, 2022

• Raise error when supposed-to-be-equal values in clusters are not equal (e.g. charge state)

  kusterlab/SIMSI-Transfer#22 · Filter by author fhamood opened on Nov 18, 2022

• Retain modification-specific columns

  kusterlab/SIMSI-Transfer#18 · Filter by author fhamood opened on Oct 11, 2022

• Evidence column with intensity proportions SIMSI vs MQ

  kusterlab/SIMSI-Transfer#16 · Filter by author fhamood opened on Sep 26, 2022

• iTRAQ support

  kusterlab/SIMSI-Transfer#13 · Filter by author fhamood opened on Sep 16, 2022