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PyAutoCortexScience

Question. Run. Rule.

Explore science with your Cortex

Read the prompt
Read the prompt
Last updated 2026-10-29 13:59:06 UTC
↻ Update

- +- Open euclid_detailed: https://github.com/PyAutoLabs/euclid_detailed
Last updated 2026-10-29 15:14:30 UTC
↻ Update

+

-

Summary

16 Running · 47 Open
+

Summary

16 Running · 42 Open
- @@ -349,43 +347,7 @@
ProjectRunningOpenLast update
subhalo_validation052026-09-07
euclid_dr116422026-10-10
analytic_gaussian002026-10-29
ep_toy_gaussian002026-10-29
autofit_inference002026-10-16
euclid_detailed002026-10-15
-

Projects

9
-
-

subhalo_validation

Do the SLaM subhalo pipelines false-detect on lenses with no subhalo0 running · 5 open · updated 2026-09-07 -
-
-
Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation
-
RAL:
/mnt/ral/jnightin/active/subhalo_validation
-
-

Current position

-

Five chains on RAL under the corrected adapt settings: rectangular_adapt on pl_eff_0 / pl_eff_1_outer (job A done, job B 342311 submitted) and the delaunay_adapt_split reruns plus rectangular_adapt on pl_sersic_0. pl_sersic_0 on delaunay_adapt_split is accepted (no false detection, +2.557).
Next: pull when the numba chains land and read the evidence_increase of each; no more 1000-pixel runs.

- -
-

Runs (5)

- - - - - - - - - -
JobStatePartitionDateDescription
342299_1openral2026-09-07
delaunay_adapt_split_pl_eff_0: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h);
reloads job A 342231_1;
the 09-07 ruling: run al…show less

delaunay_adapt_split_pl_eff_0: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h);
reloads job A 342231_1;
the 09-07 ruling: run all datasets at 1250, no more pix1000

342299_2openral2026-09-07
delaunay_adapt_split_pl_eff_1_outer: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h);
reloads job A 342231_2;
the 09-07 ruling:…show less

delaunay_adapt_split_pl_eff_1_outer: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h);
reloads job A 342231_2;
the 09-07 ruling: run all datasets at 1250, no more pix1000

342311_1openral2026-09-07
rectangular_adapt_pl_eff_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt;
reloads job A 342237_1;
the…show less

rectangular_adapt_pl_eff_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt;
reloads job A 342237_1;
the 09-07 ask: submit the rectangular runs too

342311_2openral2026-09-07
rectangular_adapt_pl_eff_1_outer: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt;
reloads job A 342237_…show less

rectangular_adapt_pl_eff_1_outer: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt;
reloads job A 342237_2;
the 09-07 ask: submit the rectangular runs too

342311_0openral2026-09-07
rectangular_adapt_pl_sersic_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt;
reloads job A 342237_0;…show less

rectangular_adapt_pl_sersic_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt;
reloads job A 342237_0;
the 09-07 ask: submit the rectangular runs too

-
Recent log — 5 of 40 entries -
    -
  • 2026-09-07 — result —
    accepted delaunay_adapt_split_pl_sersic_0 (R-20260907-01): Accepted. The numba delaunay_adapt_split chain on pl_sersic_0 (job 342273_0, 22 h 08 m, 1250 Hilbert / 1310 Delaunay pixels) lands evidence_increase +2.557 (< 5): no false detectio…show less

    accepted delaunay_adapt_split_pl_sersic_0 (R-20260907-01): Accepted. The numba delaunay_adapt_split chain on pl_sersic_0 (job 342273_0, 22 h 08 m, 1250 Hilbert / 1310 Delaunay pixels) lands evidence_increase +2.557 (< 5): no false detection. The best cell parks a 1.6e6 Msun nuisance subhalo at (-1.43, -2.36)", outside the ring. The shift from the legacy -0.30 comes with the S/N-3 adapt cap, adaptive over-sampling and the numba pool, not a code fault. Results are good; run the remaining datasets at 1250 pixels; no more 1000-pixel runs.

    • -
  • 2026-09-07 — run — 342311_0 submitted: rectangular_adapt_pl_sersic_0 — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0; the 09-07 ask: submit the rectangular runs too
    • -
  • 2026-09-07 — run — 342311_2 submitted: rectangular_adapt_pl_eff_1_outer — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_2; the 09-07 ask: submit the rectangular runs too
    • -
  • 2026-09-07 — run — 342311_1 submitted: rectangular_adapt_pl_eff_0 — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_1; the 09-07 ask: submit the rectangular runs too
    • -
  • 2026-09-07 — run — 342299_2 submitted: delaunay_adapt_split_pl_eff_1_outer — job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_2; the 09-07 ruling: run all datasets at 1250, no more pix1000
    • -
-

full log

-

active · ral · subhalo_validation#2

-
-
-
+

Projects

8

euclid_dr1

Does the sep1 DR1 delivery reproduce the ten prelim lenses by eye16 running · 42 open · updated 2026-10-10
@@ -686,8 +648,9 @@

Runs (0)

-
11 retired
    +
    12 retired
    • inference_programme — The first inference programme, retired and restarted as autolens_inference — retired 2026-09-07: restarting from scratch: the project setup was unsatisfactory and it informed how the Cortex manages projects; RAL outputs stashed at /mnt/ral/jnightin/inference_programme_retired_2026-09-07
      • +
    • subhalo_validation — Do the SLaM subhalo pipelines false-detect on lenses with no subhalo — retired 2026-10-29: retired by the human 2026-10-29; final runs pulled, tree moved to the archive/ category on the laptop and on RAL
    • subhalo — SLaM subhalo modelling of the SLACS lens sample — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29
    • euclid_dr1_prelim — Refit the ten DR1-prelim tiles and rebuild the catalogue on RAL — retired 2026-09-25: retire euclid_dr1_prelim; tree moved to z_vault by the human
    • slope_hierarchy — Hierarchical slope recovery at N=5, wrapped up and succeeded by slope_hierarchy_scale — retired 2026-09-08: wrapped up 2026-07-22 at N=5; succeeded by slope_hierarchy_scale; tree vaulted under z_projects_complete/
      • diff --git a/dashboard.md b/dashboard.md index 643c3f9..246167f 100644 --- a/dashboard.md +++ b/dashboard.md @@ -11,8 +11,8 @@ One ledger per science project: what is on the cluster right now, what the human | Where | Count | |-------|------:| | [Running](#projects) | 16 | -| [Open](#projects) | 47 | -| [Projects](#projects) | 9 | +| [Open](#projects) | 42 | +| [Projects](#projects) | 8 |
      📋 check in since last time @@ -42,7 +42,6 @@ Last check-in: 2026-10-17T11:18Z. | Project | Running | Open | Last update | |---|---:|---:|---| -| subhalo_validation | 0 | 5 | 2026-09-07 | | euclid_dr1 | 16 | 42 | 2026-10-10 | | analytic_gaussian | 0 | 0 | 2026-10-29 | | ep_toy_gaussian | 0 | 0 | 2026-10-29 | @@ -54,63 +53,6 @@ Last check-in: 2026-10-17T11:18Z. ## Projects -
      subhalo_validation — Do the SLaM subhalo pipelines false-detect on lenses with no subhalo · 0 running · 5 open · updated 2026-09-07 - -**Registered:** not recorded - -**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation `` - -**RAL:** `` /mnt/ral/jnightin/active/subhalo_validation `` - -**Current position** - -Five chains on RAL under the corrected adapt settings: rectangular_adapt on pl_eff_0 / pl_eff_1_outer (job A done, job B 342311 submitted) and the delaunay_adapt_split reruns plus rectangular_adapt on pl_sersic_0. pl_sersic_0 on delaunay_adapt_split is accepted (no false detection, +2.557). -Next: pull when the numba chains land and read the evidence_increase of each; no more 1000-pixel runs. - -
      📋 - -``` -Use the cortex skill. — resume subhalo_validation: read PyAutoCortex projects/subhalo_validation.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. -``` - -
      - -**Runs** (5) - -| Job | State | Partition | Date | Description | -|---|---|---|---|---| -| `342299_1` | open | ral | 2026-09-07 | delaunay_adapt_split_pl_eff_0: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_1; the 09-07 ruling: run al… | -| `342299_2` | open | ral | 2026-09-07 | delaunay_adapt_split_pl_eff_1_outer: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_2; the 09-07 ruling:… | -| `342311_1` | open | ral | 2026-09-07 | rectangular_adapt_pl_eff_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_1; the… | -| `342311_2` | open | ral | 2026-09-07 | rectangular_adapt_pl_eff_1_outer: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_… | -| `342311_0` | open | ral | 2026-09-07 | rectangular_adapt_pl_sersic_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0;… | - -
      Full descriptions (5 shortened above) - -- `342299_1` — delaunay_adapt_split_pl_eff_0: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_1; the 09-07 ruling: run all datasets at 1250, no more pix1000 -- `342299_2` — delaunay_adapt_split_pl_eff_1_outer: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_2; the 09-07 ruling: run all datasets at 1250, no more pix1000 -- `342311_1` — rectangular_adapt_pl_eff_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_1; the 09-07 ask: submit the rectangular runs too -- `342311_2` — rectangular_adapt_pl_eff_1_outer: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_2; the 09-07 ask: submit the rectangular runs too -- `342311_0` — rectangular_adapt_pl_sersic_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0; the 09-07 ask: submit the rectangular runs too - -
      - -
      Recent log — 5 of 40 entries - -- 2026-09-07 — *result* — accepted delaunay_adapt_split_pl_sersic_0 (R-20260907-01): Accepted. The numba delaunay_adapt_split chain on pl_sersic_0 (job 342273_0, 22 h 08 m, 1250 Hilbert / 1310 Delaunay pixels) lands evidence_increase +2.557 (< 5): no false detection. The best cell parks a 1.6e6 Msun nuisance subhalo at (-1.43, -2.36)", outside the ring. The shift from the legacy -0.30 comes with the S/N-3 adapt cap, adaptive over-sampling and the numba pool, not a code fault. Results are good; run the remaining datasets at 1250 pixels; no more 1000-pixel runs. -- 2026-09-07 — *run* — 342311_0 submitted: rectangular_adapt_pl_sersic_0 — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0; the 09-07 ask: submit the rectangular runs too -- 2026-09-07 — *run* — 342311_2 submitted: rectangular_adapt_pl_eff_1_outer — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_2; the 09-07 ask: submit the rectangular runs too -- 2026-09-07 — *run* — 342311_1 submitted: rectangular_adapt_pl_eff_0 — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_1; the 09-07 ask: submit the rectangular runs too -- 2026-09-07 — *run* — 342299_2 submitted: delaunay_adapt_split_pl_eff_1_outer — job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_2; the 09-07 ruling: run all datasets at 1250, no more pix1000 - -[full log](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/subhalo_validation.md) - -active · ral · [subhalo_validation#2](https://github.com/PyAutoLabs/subhalo_validation/issues/2) - -
      - -
      -
      euclid_dr1 — Does the sep1 DR1 delivery reproduce the ten prelim lenses by eye · 16 running · 42 open · updated 2026-10-10 **Registered:** 2026-09-11 @@ -566,9 +508,10 @@ dormant · both · no issue yet
      -
      11 retired +
      12 retired - [inference_programme](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/inference_programme.md) — The first inference programme, retired and restarted as autolens_inference — retired 2026-09-07: restarting from scratch: the project setup was unsatisfactory and it informed how the Cortex manages projects; RAL outputs stashed at /mnt/ral/jnightin/inference_programme_retired_2026-09-07 +- [subhalo_validation](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/subhalo_validation.md) — Do the SLaM subhalo pipelines false-detect on lenses with no subhalo — retired 2026-10-29: retired by the human 2026-10-29; final runs pulled, tree moved to the archive/ category on the laptop and on RAL - [subhalo](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/subhalo.md) — SLaM subhalo modelling of the SLACS lens sample — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29 - [euclid_dr1_prelim](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/euclid_dr1_prelim.md) — Refit the ten DR1-prelim tiles and rebuild the catalogue on RAL — retired 2026-09-25: retire euclid_dr1_prelim; tree moved to z_vault by the human - [slope_hierarchy](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/slope_hierarchy.md) — Hierarchical slope recovery at N=5, wrapped up and succeeded by slope_hierarchy_scale — retired 2026-09-08: wrapped up 2026-07-22 at N=5; succeeded by slope_hierarchy_scale; tree vaulted under z_projects_complete/ diff --git a/projects.yaml b/projects.yaml index adcfdee..81ca7fa 100644 --- a/projects.yaml +++ b/projects.yaml @@ -61,8 +61,8 @@ inference_programme: subhalo_validation: remote: PyAutoLabs/subhalo_validation - local_path: /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation - ral_root: /mnt/ral/jnightin/active/subhalo_validation + local_path: /mnt/c/Users/Jammy/Workspace/Science/archive/subhalo_validation + ral_root: /mnt/ral/jnightin/archive/subhalo_validation mirror: none sync_cli: hpc/sync sync_verbs: [push, pull, logs, sync, push-data-init, pull-full, status, submit, push-submit, jobs, sacct, cancel, wait-and-pull, tail, du, check, clear-logs] @@ -70,8 +70,8 @@ subhalo_validation: assistant: autolens_assistant witness_file: results/**/*.json partition: ral - status: active - note: "pulls land in the checkout (PULL_DIRS output results); run_chain.sh chains A→B afterok; witness evidence_increase < 5, subhalo_stage, test_mode" + status: retired + note: "retired 2026-10-29: retired by the human 2026-10-29; final runs pulled, tree moved to the archive/ category on the laptop and on RAL" subhalo: remote: none diff --git a/projects/subhalo_validation.md b/projects/subhalo_validation.md index f25d4c6..513870f 100644 --- a/projects/subhalo_validation.md +++ b/projects/subhalo_validation.md @@ -10,14 +10,15 @@ Next: pull when the numba chains land and read the evidence_increase of each; no ## Runs -- 342299_1 — open — ral — 2026-09-07 — delaunay_adapt_split_pl_eff_0: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_1; the 09-07 ruling: run all datasets at 1250, no more pix1000 -- 342299_2 — open — ral — 2026-09-07 — delaunay_adapt_split_pl_eff_1_outer: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_2; the 09-07 ruling: run all datasets at 1250, no more pix1000 -- 342311_1 — open — ral — 2026-09-07 — rectangular_adapt_pl_eff_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_1; the 09-07 ask: submit the rectangular runs too -- 342311_2 — open — ral — 2026-09-07 — rectangular_adapt_pl_eff_1_outer: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_2; the 09-07 ask: submit the rectangular runs too -- 342311_0 — open — ral — 2026-09-07 — rectangular_adapt_pl_sersic_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0; the 09-07 ask: submit the rectangular runs too ## Log +- 2026-10-29 — note — retired: retired by the human 2026-10-29; final runs pulled, tree moved to the archive/ category on the laptop and on RAL +- 2026-10-29 — run — 342299_1 finished — wall 42:49: delaunay_adapt_split_pl_eff_0: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_1; the 09-07 ruling: run all datasets at 1250, no more pix1000 — COMPLETED 2026-09-09T11:45 per sacct; closed when the project was retired +- 2026-10-29 — run — 342299_2 finished — wall 37:44: delaunay_adapt_split_pl_eff_1_outer: job B, numba chain at the standard 1250-pixel Delaunay mesh (8c / 96gb / 48 h); reloads job A 342231_2; the 09-07 ruling: run all datasets at 1250, no more pix1000 — COMPLETED 2026-09-09T06:40 per sacct; closed when the project was retired +- 2026-10-29 — run — 342311_0 finished — wall 17:42: rectangular_adapt_pl_sersic_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0; the 09-07 ask: submit the rectangular runs too — COMPLETED 2026-09-08T11:13 per sacct; closed when the project was retired +- 2026-10-29 — run — 342311_1 finished — wall 20:39: rectangular_adapt_pl_eff_0: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_1; the 09-07 ask: submit the rectangular runs too — COMPLETED 2026-09-08T14:10 per sacct; closed when the project was retired +- 2026-10-29 — run — 342311_2 finished — wall 22:02: rectangular_adapt_pl_eff_1_outer: job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_2; the 09-07 ask: submit the rectangular runs too — COMPLETED 2026-09-08T15:33 per sacct; closed when the project was retired - 2026-09-07 — result — accepted delaunay_adapt_split_pl_sersic_0 (R-20260907-01): Accepted. The numba delaunay_adapt_split chain on pl_sersic_0 (job 342273_0, 22 h 08 m, 1250 Hilbert / 1310 Delaunay pixels) lands evidence_increase +2.557 (< 5): no false detection. The best cell parks a 1.6e6 Msun nuisance subhalo at (-1.43, -2.36)", outside the ring. The shift from the legacy -0.30 comes with the S/N-3 adapt cap, adaptive over-sampling and the numba pool, not a code fault. Results are good; run the remaining datasets at 1250 pixels; no more 1000-pixel runs. - 2026-09-07 — run — 342311_0 submitted: rectangular_adapt_pl_sersic_0 — job B, numba chain (8c / 96gb / 48 h) at the standard 1250-pixel mesh under PIPELINE=rectangular_adapt; reloads job A 342237_0; the 09-07 ask: submit the rectangular runs too diff --git a/state.json b/state.json index 1c6d5ff..ad714d7 100644 --- a/state.json +++ b/state.json @@ -3,8 +3,8 @@ "organ": "cortex", "repo": "PyAutoCortex", "status": "yellow", - "headline": "YELLOW \u2014 9 active \u00b7 16 running", - "updated": "2026-10-29T13:59:06Z", + "headline": "YELLOW \u2014 8 active \u00b7 16 running", + "updated": "2026-10-29T15:14:31Z", "pages_url": "https://pyautolabs.github.io/PyAutoCortex/", "items": [ {