From 543d74ea8b26aa3f53939ae1073f65ac11aa1598 Mon Sep 17 00:00:00 2001 From: Jammy2211 Date: Thu, 29 Oct 2026 11:14:31 +0000 Subject: [PATCH 1/3] projects.yaml: point local_path at the Workspace/Science tree Science moved from C:\Users\Jammy\Science to C:\Users\Jammy\Workspace\Science, and the four development projects (analytic_gaussian, ep_toy_gaussian, ic50_workspace, slope_hierarchy_scale) moved from active/ to development/ on 2026-10-29. euclid now sits under complete/. Rows whose tree no longer exists anywhere (subhalo, cowls, cowls_ansofi and several retired rows) are left unchanged for the human to resolve. ral_root is unchanged: RAL trees were not moved. Co-Authored-By: Claude Opus 5.5 --- projects.yaml | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/projects.yaml b/projects.yaml index d93aa2d..fbe90c2 100644 --- a/projects.yaml +++ b/projects.yaml @@ -61,7 +61,7 @@ inference_programme: subhalo_validation: remote: PyAutoLabs/subhalo_validation - local_path: /mnt/c/Users/Jammy/Science/active/subhalo_validation + local_path: /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation ral_root: /mnt/ral/jnightin/active/subhalo_validation mirror: none sync_cli: hpc/sync @@ -89,7 +89,7 @@ subhalo: euclid: remote: none - local_path: /mnt/c/Users/Jammy/Science/active/euclid + local_path: /mnt/c/Users/Jammy/Workspace/Science/complete/euclid ral_root: /mnt/ral/jnightin/active/euclid mirror: none sync_cli: hpc/sync @@ -117,7 +117,7 @@ euclid_dr1_prelim: euclid_dr1: remote: none - local_path: /mnt/c/Users/Jammy/Science/euclid_dr1 + local_path: /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1 ral_root: /mnt/ral/jnightin/euclid_dr1 mirror: none sync_cli: hpc/sync @@ -131,7 +131,7 @@ euclid_dr1: analytic_gaussian: remote: none - local_path: /mnt/c/Users/Jammy/Science/active/analytic_gaussian + local_path: /mnt/c/Users/Jammy/Workspace/Science/development/analytic_gaussian ral_root: /mnt/ral/jnightin/active/analytic_gaussian mirror: none sync_cli: hpc/sync @@ -145,7 +145,7 @@ analytic_gaussian: ep_toy_gaussian: remote: PyAutoLabs/ep_toy_gaussian - local_path: /mnt/c/Users/Jammy/Science/active/ep_toy_gaussian + local_path: /mnt/c/Users/Jammy/Workspace/Science/development/ep_toy_gaussian ral_root: /mnt/ral/jnightin/active/ep_toy_gaussian mirror: none sync_cli: hpc/sync @@ -165,7 +165,7 @@ ep_toy_gaussian: # --------------------------------------------------------------------------- # profiling: remote: none - local_path: /mnt/c/Users/Jammy/Science/archive/profiling + local_path: /mnt/c/Users/Jammy/Workspace/Science/archive/profiling ral_root: /mnt/ral/jnightin/archive/profiling mirror: none sync_cli: hpc/sync @@ -193,7 +193,7 @@ cowls_diana: subhalo_simulations: remote: none - local_path: /mnt/c/Users/Jammy/Science/archive/subhalo_simulations + local_path: /mnt/c/Users/Jammy/Workspace/Science/archive/subhalo_simulations ral_root: /mnt/ral/jnightin/archive/subhalo_simulations mirror: none sync_cli: hpc/sync @@ -207,7 +207,7 @@ subhalo_simulations: slope_hierarchy: remote: Jammy2211/slope_hierarchy - local_path: /mnt/c/Users/Jammy/Science/complete/slope_hierarchy + local_path: /mnt/c/Users/Jammy/Workspace/Science/complete/slope_hierarchy ral_root: /mnt/ral/jnightin/complete/slope_hierarchy mirror: none sync_cli: hpc/sync @@ -221,7 +221,7 @@ slope_hierarchy: slope_hierarchy_scale: remote: PyAutoLabs/slope_hierarchy_scale - local_path: /mnt/c/Users/Jammy/Science/active/slope_hierarchy_scale + local_path: /mnt/c/Users/Jammy/Workspace/Science/development/slope_hierarchy_scale ral_root: /mnt/ral/jnightin/active/slope_hierarchy_scale mirror: none sync_cli: hpc/sync @@ -263,7 +263,7 @@ concr: ic50_workspace: remote: Jammy2211/ic50_workspace - local_path: /mnt/c/Users/Jammy/Science/active/ic50_workspace + local_path: /mnt/c/Users/Jammy/Workspace/Science/development/ic50_workspace ral_root: /mnt/ral/jnightin/active/ic50_workspace mirror: none sync_cli: hpc/sync @@ -319,7 +319,7 @@ euclid_sersics: pj011646_final: remote: none - local_path: /mnt/c/Users/Jammy/Science/complete/PJ011646_final + local_path: /mnt/c/Users/Jammy/Workspace/Science/complete/PJ011646_final ral_root: /mnt/ral/jnightin/complete/PJ011646_final mirror: none sync_cli: hpc/sync @@ -333,7 +333,7 @@ pj011646_final: euclid_detailed: remote: PyAutoLabs/euclid_detailed - local_path: /mnt/c/Users/Jammy/Science/active/euclid_detailed + local_path: /mnt/c/Users/Jammy/Workspace/Science/active/euclid_detailed ral_root: /mnt/ral/jnightin/active/euclid_detailed mirror: none sync_cli: hpc/sync From 770accb99ff69f41824a1248e0a1f767b6032a4d Mon Sep 17 00:00:00 2001 From: Jammy2211 Date: Thu, 29 Oct 2026 11:29:03 +0000 Subject: [PATCH 2/3] Retire subhalo, cowls and cowls_ansofi: defunct, local trees deleted Co-Authored-By: Claude Opus 5.5 --- projects.yaml | 12 ++++++------ projects/cowls.md | 1 + projects/cowls_ansofi.md | 1 + projects/subhalo.md | 1 + 4 files changed, 9 insertions(+), 6 deletions(-) diff --git a/projects.yaml b/projects.yaml index fbe90c2..6779120 100644 --- a/projects.yaml +++ b/projects.yaml @@ -84,8 +84,8 @@ subhalo: assistant: autolens_assistant witness_file: results/**/*.json partition: both - status: active - note: "registered 2026-10-15 by human decision (PyAutoCortex#67), overriding schema decision 52(a) for this tree: not a git repo, so remote none; ledger is the generic PyAutoLens project-template README; SLACS sample under dataset/, output/ empty, no results/ yet; hpc/sync.conf targets HPC_BASE=/mnt/ral/jnightin/active; batch_cpu submits still say --partition=cpu (no such partition on RAL); ral_root not yet created on RAL; witness undefined until a science task pre-registers one" + status: retired + note: "retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29" euclid: remote: none @@ -356,8 +356,8 @@ cowls: assistant: autolens_assistant witness_file: results/**/*.json partition: ral - status: active - note: "born 2026-10-15: euclid_detailed SLaM pipeline (light[1] MGE 4x30 + point, 1250 source pixels, power-law mass) applied to COWLS JWST lenses, starting with M25 COSJ100024+015334 (F444W default, mask_extra_galaxies noise-scaled); source_lp JAX-CPU then numba-CPU; not yet submitted" + status: retired + note: "retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29" cowls_ansofi: remote: PyAutoLabs/cowls_ansofi @@ -370,5 +370,5 @@ cowls_ansofi: assistant: autolens_assistant witness_file: results/**/*.json partition: ral - status: active - note: "born 2026-10-19: spawned from cowls; autolens_inference delaunay_1250 numba_cpu sparse SLaM (MGE 20x2/20x1, Delaunay 1250 AdaptSplit, n_live 200/150/75/150/150) on M25 COSJ100024+015334 F444W only, mask_extra_galaxies noise-scaled, 2.1\" circular mask at (0,0); all stages numba-CPU, one process; not yet submitted" + status: retired + note: "retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29" diff --git a/projects/cowls.md b/projects/cowls.md index 7a2fceb..8ce1e6f 100644 --- a/projects/cowls.md +++ b/projects/cowls.md @@ -11,4 +11,5 @@ Born 2026-10-15. Repo PyAutoLabs/cowls (private), M25 COSJ100024+015334 dataset ## Log +- 2026-10-29 — note — retired: defunct; local tree deleted by the human 2026-10-29 - 2026-10-15 — note — ledger opened diff --git a/projects/cowls_ansofi.md b/projects/cowls_ansofi.md index 142e8c9..f769b7c 100644 --- a/projects/cowls_ansofi.md +++ b/projects/cowls_ansofi.md @@ -11,4 +11,5 @@ Born 2026-10-19. Repo PyAutoLabs/cowls_ansofi (private), M25 COSJ100024+015334 F ## Log +- 2026-10-29 — note — retired: defunct; local tree deleted by the human 2026-10-29 - 2026-10-19 — note — ledger opened diff --git a/projects/subhalo.md b/projects/subhalo.md index 4f45243..dad54a2 100644 --- a/projects/subhalo.md +++ b/projects/subhalo.md @@ -11,4 +11,5 @@ Registered 2026-10-15 (PyAutoCortex#67): SLACS sample under dataset/, output/ em ## Log +- 2026-10-29 — note — retired: defunct; local tree deleted by the human 2026-10-29 - 2026-10-15 — note — ledger opened From a527c709b3708832eedc6af6dbe068cf46e2db0e Mon Sep 17 00:00:00 2001 From: Jammy2211 Date: Thu, 29 Oct 2026 12:49:22 +0000 Subject: [PATCH 3/3] dashboard: re-render for the path fixes and three retirements Co-Authored-By: Claude Opus 5.5 --- dashboard.html | 119 ++++++++------------------------------ dashboard.md | 152 +++++++------------------------------------------ state.json | 36 ++++++------ 3 files changed, 64 insertions(+), 243 deletions(-) diff --git a/dashboard.html b/dashboard.html index 45b5fe4..f425aae 100644 --- a/dashboard.html +++ b/dashboard.html @@ -4,7 +4,7 @@ PyAutoCortex Dashboard - + -

PyAutoCortexScience

Question. Run. Rule.

Explore science with your Cortex

Read the prompt
Read the prompt
Last updated 2026-10-23 15:27:28 UTC
↻ Update

- +- Open euclid_detailed: https://github.com/PyAutoLabs/euclid_detailed
Last updated 2026-10-29 12:49:17 UTC
↻ Update

+

Summary

16 Running · 47 Open
- @@ -351,21 +348,19 @@ - -
ProjectRunningOpenLast update
subhalo_validation052026-09-07
subhalo002026-10-15
euclid_dr116422026-10-10
analytic_gaussian002026-10-23
ep_toy_gaussian002026-10-14
autolens_inference002026-10-21
autofit_inference002026-10-16
euclid_detailed002026-10-15
cowls002026-10-15
cowls_ansofi002026-10-19
-

Projects

12
+

Projects

9

subhalo_validation

Do the SLaM subhalo pipelines false-detect on lenses with no subhalo0 running · 5 open · updated 2026-09-07
Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Science/active/subhalo_validation
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation
RAL:
/mnt/ral/jnightin/active/subhalo_validation

Current position

Five chains on RAL under the corrected adapt settings: rectangular_adapt on pl_eff_0 / pl_eff_1_outer (job A done, job B 342311 submitted) and the delaunay_adapt_split reruns plus rectangular_adapt on pl_sersic_0. pl_sersic_0 on delaunay_adapt_split is accepted (no false detection, +2.557).
Next: pull when the numba chains land and read the evidence_increase of each; no more 1000-pixel runs.

- +

Runs (5)

@@ -391,40 +386,17 @@

Runs (5)

-
-

subhalo

SLaM subhalo modelling of the SLACS lens sampleno runs recorded · updated 2026-10-15 -
-
-
Registered:
2026-10-15
-
Local:
/mnt/c/Users/Jammy/Science/active/subhalo
-
RAL:
/mnt/ral/jnightin/active/subhalo
-
-

Current position

-

SLACS sample under dataset/, output/ empty, no runs yet; ral_root not yet created on RAL — the first hpc/sync push creates it.

- -
-

Runs (0)

-

nothing on the cluster

-
Recent log — 1 of 1 entry -
    -
  • 2026-10-15 — note — ledger opened
    • -
-

full log

-

active · both · no issue yet

-
-
-

euclid_dr1

Does the sep1 DR1 delivery reproduce the ten prelim lenses by eye16 running · 42 open · updated 2026-10-10
Registered:
2026-09-11
-
Local:
/mnt/c/Users/Jammy/Science/euclid_dr1
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1
RAL:
/mnt/ral/jnightin/euclid_dr1

Current position

The top-1000 DR1 sep1 vis_lp array finished 971 of 1000; 29 hit the 18-hour walltime. Array 344645 is now running vis_pix with the Numba CPU sparse route for those 971 completed lenses only.

- +

Runs (58)

@@ -508,12 +480,12 @@

Runs (58)

Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Science/active/analytic_gaussian
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/development/analytic_gaussian
RAL:
/mnt/ral/jnightin/active/analytic_gaussian

Current position

Wave 1 (342413, 200 seeds at N=5) is accepted as the baseline: autofit EP is exact on the Gaussian leg, leg B sigma misses as pre-registered (78/200), collapse rate 0/200. On criterion 2, astra and an independent Opus review both favour an under-calibrated mu threshold (calibrated on five unrepresentative seeds) and found no defect in the minimal-EP control; both flag the per-site sigma>0 clip (analytic_ep_minimal.py:333) as the one audit target, and astra will not clear the control without an independent reconstruction of the EP fixed point. Next: run the planned diagnostic (archive/tasks/analytic_gaussian/minimal_ep_legb_mu_threshold.md) on a passing, an edge and the worst mu seed; the N=25 rung stays written but unsubmitted until it lands.

- +

Runs (0)

nothing on the cluster

@@ -535,12 +507,12 @@

Runs (0)

Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Science/active/ep_toy_gaussian
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/development/ep_toy_gaussian
RAL:
/mnt/ral/jnightin/active/ep_toy_gaussian

Current position

Wave 1 (n50_seed42: 342639 + 342640_[0-2]) failed on infrastructure — EP x3 on EMFILE (fixed by PyAutoFit#1632/#1634, both in the RAL mirror at 404b3e5f7), NUTS on OOM at the 8 GB cap while XLA compiled the 50-factor window-adaptation scan, which grows with N (≥5.4 GB at N=20 locally). Wave 2 is prepared but not submitted: sample n50_seed42_w2 (free locally and on RAL; still needs its toy.SAMPLES entry), submit_nuts raised to 64 GB, submit_ep unchanged at 8 GB (peak ~590 MB). The collapse question at N=50 is unanswered; only n5_smoke speaks (EP RECOVER 3/3, NUTS 49.89/11.14). Next: human go, add the sample entry, push and submit NUTS then EP with SAMPLE=n50_seed42_w2 exported.

- +

Runs (0)

nothing on the cluster

@@ -562,12 +534,12 @@

Runs (0)

Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Science/active/slope_hierarchy_scale
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/development/slope_hierarchy_scale
RAL:
/mnt/ral/jnightin/active/slope_hierarchy_scale

Current position

The N=25 graphical baselines are in: per-lens fits (342348) give a naive parent of 1.999 / 0.089 (deconvolved 0.085), and the joint NUTS fit (342350_0) recovers mean 1.994 [1.976, 2.014] and sigma 0.087 [0.074, 0.104] against truth 2.0 / 0.1; its summary JSON still needs writing offline from samples.csv (now under z_vault/sample_n25_seed42). The EP arm returned the prior on the Laplace projection (343299: hierarchical factor 0/50 SUCCESS). The cure has landed: PyAutoFit#1656 (merged 2026-09-30, released 2026.10.7.1) adds af.LaplaceOptimiser(projection="moments"), which takes the tight toy from 0 to 3/3 SUCCESS. The shared RAL PyAutoFit mirror is still 404b3e5f7 (2026-09-27, kept frozen for euclid_dr1) and lacks both #1655 and #1656, so any rerun needs a private PyAutoFit checkout on RAL. All earlier output is vaulted in z_vault/ on laptop and RAL, output/ is empty for the rerun. Next: rerun the N=25 EP arm with projection="moments" on a private PyAutoFit checkout and compare its scatter against the NUTS baseline.

- +

Runs (0)

nothing on the cluster

@@ -589,12 +561,12 @@

Runs (0)

Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Science/active/ic50_workspace
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/development/ic50_workspace
RAL:
/mnt/ral/jnightin/active/ic50_workspace

Current position

The scale ladder is in. EP passes N=5/10/25 with coef_mean within 3σ and cost growing about linearly per sweep (26/50/140 s); it died at N=50 on a projection assert. That fix has landed: PyAutoFit#1655 (merged 2026-09-30, released 2026.10.7.1) raises ProjectionException, which EP factor_step now recovers from instead of killing the run. Graphical is cheaper but overconfident beyond N=25, and EP hill_coef widths are not yet comparable because util.py reports factor-message widths. The shared RAL PyAutoFit mirror is still 404b3e5f7 (2026-09-27, kept frozen for euclid_dr1) and lacks both #1655 and #1656, so any rerun needs a private PyAutoFit checkout on RAL. All earlier output is vaulted in z_vault/ on laptop and RAL, output/ is empty for the rerun. Next: rerun the EP ladder on a private PyAutoFit checkout with output on and a fixed seed, report hill_coef from the mean field, then give ep_lbfgs_jax a witness as the scale lever.

- +

Runs (0)

nothing on the cluster

@@ -670,12 +642,12 @@

Runs (0)

Registered:
2026-10-15
-
Local:
/mnt/c/Users/Jammy/Science/active/euclid_detailed
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/active/euclid_detailed
RAL:
/mnt/ral/jnightin/active/euclid_detailed

Current position

Born 2026-10-15. Repo, 31 datasets, output_dr1 (euclid_dr1 fits) and scripts/slam.py ready; test mode passes both stages. Next: hpc/sync push, then submit_slam_chain.sh --sample=source_residuals and --sample=lens_light_residuals on RAL (partition ral).

- +

Runs (0)

nothing on the cluster

@@ -688,58 +660,12 @@

Runs (0)

-
-

cowls

euclid_detailed SLaM pipeline on COWLS JWST strong lenses, from COSJ100024+015334no runs recorded · updated 2026-10-15 -
-
-
Registered:
2026-10-15
-
Local:
/mnt/c/Users/Jammy/Science/active/cowls
-
RAL:
/mnt/ral/jnightin/active/cowls
-
-

Current position

-

Born 2026-10-15. Repo PyAutoLabs/cowls (private), M25 COSJ100024+015334 dataset (4 bands) and scripts/slam.py ready; test mode passes both stages on F444W. Next, after the RAL PyAuto install is updated: hpc/sync push, then submit_slam_chain.sh --sample=M25 (F444W, partition ral).

- -
-

Runs (0)

-

nothing on the cluster

-
Recent log — 1 of 1 entry -
    -
  • 2026-10-15 — note — ledger opened
    • -
-

full log

-

active · ral · no issue yet

-
-
-
-
-

cowls_ansofi

autolens_inference Delaunay-1250 numba CPU SLaM on COSJ100024+015334, F444W onlyno runs recorded · updated 2026-10-19 -
-
-
Registered:
2026-10-19
-
Local:
/mnt/c/Users/Jammy/Science/active/cowls_ansofi
-
RAL:
/mnt/ral/jnightin/active/cowls_ansofi
-
-

Current position

-

Born 2026-10-19. Repo PyAutoLabs/cowls_ansofi (private), M25 COSJ100024+015334 F444W dataset and scripts/slam.py ready; test mode passes all five searches (144 s, numba sparse on every stage). Next: hpc/sync push-submit cpu submit_slam (8 CPU, 64 GB, 5 days, partition ral).

- -
-

Runs (0)

-

nothing on the cluster

-
Recent log — 1 of 1 entry -
    -
  • 2026-10-19 — note — ledger opened
    • -
-

full log

-

active · ral · no issue yet

-
-
-

euclid

The original Euclid DR1 grade-AB catalogue project, superseded by euclid_dr1dormant · no runs recorded · updated 2026-10-15
Registered:
not recorded
-
Local:
/mnt/c/Users/Jammy/Science/active/euclid
+
Local:
/mnt/c/Users/Jammy/Workspace/Science/complete/euclid
RAL:
/mnt/ral/jnightin/active/euclid

Current position

@@ -759,12 +685,15 @@

Runs (0)

-
5 retired
    +
    8 retired
    • inference_programme — The first inference programme, retired and restarted as autolens_inference — retired 2026-09-07: restarting from scratch: the project setup was unsatisfactory and it informed how the Cortex manages projects; RAL outputs stashed at /mnt/ral/jnightin/inference_programme_retired_2026-09-07
      • +
    • subhalo — SLaM subhalo modelling of the SLACS lens sample — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29
    • euclid_dr1_prelim — Refit the ten DR1-prelim tiles and rebuild the catalogue on RAL — retired 2026-09-25: retire euclid_dr1_prelim; tree moved to z_vault by the human
    • slope_hierarchy — Hierarchical slope recovery at N=5, wrapped up and succeeded by slope_hierarchy_scale — retired 2026-09-08: wrapped up 2026-07-22 at N=5; succeeded by slope_hierarchy_scale; tree vaulted under z_projects_complete/
    • euclid_sersics — Why does the lens-light Sersic index pile up at the n=5 prior edge — retired 2026-09-25: retire euclid_sersics as well; local tree deleted 2026-10-14 (no actionable results)
    • pj011646_final — Final masked PJ0116-24 power-law and multipole subhalo comparison — retired 2026-10-14: complete; tree moved to z_projects_complete 2026-10-14
      • +
    • cowls — euclid_detailed SLaM pipeline on COWLS JWST strong lenses, from COSJ100024+015334 — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29
      • +
    • cowls_ansofi — autolens_inference Delaunay-1250 numba CPU SLaM on COSJ100024+015334, F444W only — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29

    No ledger

diff --git a/dashboard.md b/dashboard.md index 4151eac..cb5a2b8 100644 --- a/dashboard.md +++ b/dashboard.md @@ -1,18 +1,18 @@ # PyAutoCortex Dashboard - + This is the markdown version of the [PyAutoCortex Dashboard](https://pyautolabs.github.io/PyAutoCortex/), which puts the check-in and each project's resume prompt on your clipboard with a single tap of 📋. One ledger per science project: what is on the cluster right now, what the human said they would do next, and the last few things they wrote down. Nothing here is inferred from a result — the board hands you the check-in and the resume prompt; what a run meant is yours to log. -> **Last updated 2026-10-23.** +> **Last updated 2026-10-29.** | Where | Count | |-------|------:| | [Running](#projects) | 16 | | [Open](#projects) | 47 | -| [Projects](#projects) | 12 | +| [Projects](#projects) | 9 |
📋 check in since last time @@ -43,7 +43,6 @@ Last check-in: 2026-10-17T11:18Z. | Project | Running | Open | Last update | |---|---:|---:|---| | subhalo_validation | 0 | 5 | 2026-09-07 | -| subhalo | 0 | 0 | 2026-10-15 | | euclid_dr1 | 16 | 42 | 2026-10-10 | | analytic_gaussian | 0 | 0 | 2026-10-23 | | ep_toy_gaussian | 0 | 0 | 2026-10-14 | @@ -52,8 +51,6 @@ Last check-in: 2026-10-17T11:18Z. | autolens_inference | 0 | 0 | 2026-10-21 | | autofit_inference | 0 | 0 | 2026-10-16 | | euclid_detailed | 0 | 0 | 2026-10-15 | -| cowls | 0 | 0 | 2026-10-15 | -| cowls_ansofi | 0 | 0 | 2026-10-19 | ## Projects @@ -61,7 +58,7 @@ Last check-in: 2026-10-17T11:18Z. **Registered:** not recorded -**Local:** `` /mnt/c/Users/Jammy/Science/active/subhalo_validation `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation `` **RAL:** `` /mnt/ral/jnightin/active/subhalo_validation `` @@ -73,7 +70,7 @@ Next: pull when the numba chains land and read the evidence_increase of each; no
📋 ``` -Use the cortex skill. — resume subhalo_validation: read PyAutoCortex projects/subhalo_validation.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/subhalo_validation/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume subhalo_validation: read PyAutoCortex projects/subhalo_validation.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -114,47 +111,11 @@ active · ral · [subhalo_validation#2](https://github.com/PyAutoLabs/subhalo_va
-
subhalo — SLaM subhalo modelling of the SLACS lens sample · no runs recorded · updated 2026-10-15 - -**Registered:** 2026-10-15 - -**Local:** `` /mnt/c/Users/Jammy/Science/active/subhalo `` - -**RAL:** `` /mnt/ral/jnightin/active/subhalo `` - -**Current position** - -SLACS sample under dataset/, output/ empty, no runs yet; ral_root not yet created on RAL — the first hpc/sync push creates it. - -
📋 - -``` -Use the cortex skill. — resume subhalo: read PyAutoCortex projects/subhalo.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/subhalo/README.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. -``` - -
- -**Runs** (0) - -_nothing on the cluster_ - -
Recent log — 1 of 1 entry - -- 2026-10-15 — *note* — ledger opened - -[full log](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/subhalo.md) - -active · both · no issue yet - -
- -
-
euclid_dr1 — Does the sep1 DR1 delivery reproduce the ten prelim lenses by eye · 16 running · 42 open · updated 2026-10-10 **Registered:** 2026-09-11 -**Local:** `` /mnt/c/Users/Jammy/Science/euclid_dr1 `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1 `` **RAL:** `` /mnt/ral/jnightin/euclid_dr1 `` @@ -165,7 +126,7 @@ The top-1000 DR1 sep1 vis_lp array finished 971 of 1000; 29 hit the 18-hour wall
📋 ``` -Use the cortex skill. — resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -301,7 +262,7 @@ active · ral · no issue yet **Registered:** not recorded -**Local:** `` /mnt/c/Users/Jammy/Science/active/analytic_gaussian `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/development/analytic_gaussian `` **RAL:** `` /mnt/ral/jnightin/active/analytic_gaussian `` @@ -312,7 +273,7 @@ Wave 1 (342413, 200 seeds at N=5) is accepted as the baseline: autofit EP is exa
📋 ``` -Use the cortex skill. — resume analytic_gaussian: read PyAutoCortex projects/analytic_gaussian.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/analytic_gaussian/wiki/project/state.md and the assistant autofit_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume analytic_gaussian: read PyAutoCortex projects/analytic_gaussian.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/development/analytic_gaussian/wiki/project/state.md and the assistant autofit_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -341,7 +302,7 @@ active · ral · [PyAutoCortex#34](https://github.com/PyAutoLabs/PyAutoCortex/is **Registered:** not recorded -**Local:** `` /mnt/c/Users/Jammy/Science/active/ep_toy_gaussian `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/development/ep_toy_gaussian `` **RAL:** `` /mnt/ral/jnightin/active/ep_toy_gaussian `` @@ -352,7 +313,7 @@ Wave 1 (n50_seed42: 342639 + 342640_[0-2]) failed on infrastructure — EP x3 on
📋 ``` -Use the cortex skill. — resume ep_toy_gaussian: read PyAutoCortex projects/ep_toy_gaussian.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/ep_toy_gaussian/wiki/project/state.md and the assistant autofit_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume ep_toy_gaussian: read PyAutoCortex projects/ep_toy_gaussian.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/development/ep_toy_gaussian/wiki/project/state.md and the assistant autofit_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -381,7 +342,7 @@ active · ral · [ep_toy_gaussian#1](https://github.com/PyAutoLabs/ep_toy_gaussi **Registered:** not recorded -**Local:** `` /mnt/c/Users/Jammy/Science/active/slope_hierarchy_scale `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/development/slope_hierarchy_scale `` **RAL:** `` /mnt/ral/jnightin/active/slope_hierarchy_scale `` @@ -392,7 +353,7 @@ The N=25 graphical baselines are in: per-lens fits (342348) give a naive parent
📋 ``` -Use the cortex skill. — resume slope_hierarchy_scale: read PyAutoCortex projects/slope_hierarchy_scale.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/slope_hierarchy_scale/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume slope_hierarchy_scale: read PyAutoCortex projects/slope_hierarchy_scale.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/development/slope_hierarchy_scale/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -421,7 +382,7 @@ active · both · [slope_hierarchy_scale#2](https://github.com/PyAutoLabs/slope_ **Registered:** not recorded -**Local:** `` /mnt/c/Users/Jammy/Science/active/ic50_workspace `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/development/ic50_workspace `` **RAL:** `` /mnt/ral/jnightin/active/ic50_workspace `` @@ -432,7 +393,7 @@ The scale ladder is in. EP passes N=5/10/25 with coef_mean within 3σ and cost g
📋 ``` -Use the cortex skill. — resume ic50_workspace: read PyAutoCortex projects/ic50_workspace.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/ic50_workspace/NOTES.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume ic50_workspace: read PyAutoCortex projects/ic50_workspace.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/development/ic50_workspace/NOTES.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -541,7 +502,7 @@ active · ral · [autofit_inference#8](https://github.com/PyAutoLabs/autofit_inf **Registered:** 2026-10-15 -**Local:** `` /mnt/c/Users/Jammy/Science/active/euclid_detailed `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/active/euclid_detailed `` **RAL:** `` /mnt/ral/jnightin/active/euclid_detailed `` @@ -552,7 +513,7 @@ Born 2026-10-15. Repo, 31 datasets, output_dr1 (euclid_dr1 fits) and scripts/sla
📋 ``` -Use the cortex skill. — resume euclid_detailed: read PyAutoCortex projects/euclid_detailed.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/euclid_detailed/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. +Use the cortex skill. — resume euclid_detailed: read PyAutoCortex projects/euclid_detailed.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_detailed/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. ```
@@ -573,83 +534,11 @@ active · ral · no issue yet
-
cowls — euclid_detailed SLaM pipeline on COWLS JWST strong lenses, from COSJ100024+015334 · no runs recorded · updated 2026-10-15 - -**Registered:** 2026-10-15 - -**Local:** `` /mnt/c/Users/Jammy/Science/active/cowls `` - -**RAL:** `` /mnt/ral/jnightin/active/cowls `` - -**Current position** - -Born 2026-10-15. Repo PyAutoLabs/cowls (private), M25 COSJ100024+015334 dataset (4 bands) and scripts/slam.py ready; test mode passes both stages on F444W. Next, after the RAL PyAuto install is updated: hpc/sync push, then submit_slam_chain.sh --sample=M25 (F444W, partition ral). - -
📋 - -``` -Use the cortex skill. — resume cowls: read PyAutoCortex projects/cowls.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/cowls/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. -``` - -
- -**Runs** (0) - -_nothing on the cluster_ - -
Recent log — 1 of 1 entry - -- 2026-10-15 — *note* — ledger opened - -[full log](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/cowls.md) - -active · ral · no issue yet - -
- -
- -
cowls_ansofi — autolens_inference Delaunay-1250 numba CPU SLaM on COSJ100024+015334, F444W only · no runs recorded · updated 2026-10-19 - -**Registered:** 2026-10-19 - -**Local:** `` /mnt/c/Users/Jammy/Science/active/cowls_ansofi `` - -**RAL:** `` /mnt/ral/jnightin/active/cowls_ansofi `` - -**Current position** - -Born 2026-10-19. Repo PyAutoLabs/cowls_ansofi (private), M25 COSJ100024+015334 F444W dataset and scripts/slam.py ready; test mode passes all five searches (144 s, numba sparse on every stage). Next: hpc/sync push-submit cpu submit_slam (8 CPU, 64 GB, 5 days, partition ral). - -
📋 - -``` -Use the cortex skill. — resume cowls_ansofi: read PyAutoCortex projects/cowls_ansofi.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/active/cowls_ansofi/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say. -``` - -
- -**Runs** (0) - -_nothing on the cluster_ - -
Recent log — 1 of 1 entry - -- 2026-10-19 — *note* — ledger opened - -[full log](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/cowls_ansofi.md) - -active · ral · no issue yet - -
- -
-
euclid — The original Euclid DR1 grade-AB catalogue project, superseded by euclid_dr1 · dormant · no runs recorded · updated 2026-10-15 **Registered:** not recorded -**Local:** `` /mnt/c/Users/Jammy/Science/active/euclid `` +**Local:** `` /mnt/c/Users/Jammy/Workspace/Science/complete/euclid `` **RAL:** `` /mnt/ral/jnightin/active/euclid `` @@ -676,13 +565,16 @@ dormant · both · no issue yet
-
5 retired +
8 retired - [inference_programme](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/inference_programme.md) — The first inference programme, retired and restarted as autolens_inference — retired 2026-09-07: restarting from scratch: the project setup was unsatisfactory and it informed how the Cortex manages projects; RAL outputs stashed at /mnt/ral/jnightin/inference_programme_retired_2026-09-07 +- [subhalo](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/subhalo.md) — SLaM subhalo modelling of the SLACS lens sample — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29 - [euclid_dr1_prelim](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/euclid_dr1_prelim.md) — Refit the ten DR1-prelim tiles and rebuild the catalogue on RAL — retired 2026-09-25: retire euclid_dr1_prelim; tree moved to z_vault by the human - [slope_hierarchy](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/slope_hierarchy.md) — Hierarchical slope recovery at N=5, wrapped up and succeeded by slope_hierarchy_scale — retired 2026-09-08: wrapped up 2026-07-22 at N=5; succeeded by slope_hierarchy_scale; tree vaulted under z_projects_complete/ - [euclid_sersics](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/euclid_sersics.md) — Why does the lens-light Sersic index pile up at the n=5 prior edge — retired 2026-09-25: retire euclid_sersics as well; local tree deleted 2026-10-14 (no actionable results) - [pj011646_final](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/pj011646_final.md) — Final masked PJ0116-24 power-law and multipole subhalo comparison — retired 2026-10-14: complete; tree moved to z_projects_complete 2026-10-14 +- [cowls](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/cowls.md) — euclid_detailed SLaM pipeline on COWLS JWST strong lenses, from COSJ100024+015334 — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29 +- [cowls_ansofi](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/cowls_ansofi.md) — autolens_inference Delaunay-1250 numba CPU SLaM on COSJ100024+015334, F444W only — retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29
diff --git a/state.json b/state.json index 38df967..c71318c 100644 --- a/state.json +++ b/state.json @@ -3,8 +3,8 @@ "organ": "cortex", "repo": "PyAutoCortex", "status": "yellow", - "headline": "YELLOW \u2014 12 active \u00b7 16 running", - "updated": "2026-10-23T15:27:28Z", + "headline": "YELLOW \u2014 9 active \u00b7 16 running", + "updated": "2026-10-29T12:49:17Z", "pages_url": "https://pyautolabs.github.io/PyAutoCortex/", "items": [ { @@ -17,97 +17,97 @@ "severity": "info", "text": "euclid_dr1: 345279 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 345305 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 350804 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 351085 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 351086 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 351087 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 351088 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 351089 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 356227 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 356319 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 384040 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 384046 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 402719 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 402720 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 402721 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." }, { "severity": "info", "text": "euclid_dr1: 402722 running (ral)", "url": null, - "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." + "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." } ] }