Issues

• Compile - include SNP names?

  MorrellLAB/BAD_Mutations#53 · Filter by author conJUSTover opened on Jul 14, 2020
  1

• Compile Bug - Won't work on test data

  MorrellLAB/BAD_Mutations#52 · Filter by author conJUSTover opened on Jul 6, 2020
  5

• The XML document has moved

  MorrellLAB/BAD_Mutations#50 · Filter by author hubner-lab opened on Jan 26, 2020
  2

• Fetch only the latest CDS for each species

  MorrellLAB/BAD_Mutations#49 · Filter by author TomJKono opened on Nov 21, 2019

• Multiple Trees in File

  MorrellLAB/BAD_Mutations#48 · Filter by author mmckibben opened on Nov 7, 2019
  6

• The logistic P value is only valid for the 41 genomes

  MorrellLAB/BAD_Mutations#45 · Filter by author lilei1 opened on Mar 18, 2019

• Doesn't find HyPhy properly

  MorrellLAB/BAD_Mutations#43 · Filter by author mojaveazure opened on Feb 6, 2017

• Add Logistic Regression to Prediction

  MorrellLAB/BAD_Mutations#42 · Filter by author TomJKono opened on Jan 11, 2017
  

• Add Filtering of Species Databases

  MorrellLAB/BAD_Mutations#40 · Filter by author TomJKono opened on Dec 16, 2016

• Fail nicely when "required" arguments are not specified

  MorrellLAB/BAD_Mutations#39 · Filter by author TomJKono opened on Dec 16, 2016

• No output written to output dir with silent error

  MorrellLAB/BAD_Mutations#38 · Filter by author kate-crosby opened on Dec 1, 2016
  3

• run "setup" in MSI, HYPHY and PASTA can not set path automatically

  MorrellLAB/BAD_Mutations#27 · Filter by author lilei1 opened on Apr 15, 2016
  1

• Missing Pasta

  MorrellLAB/BAD_Mutations#23 · Filter by author Aerin13 opened on Jan 27, 2016

• Inconsistant species naming

  MorrellLAB/BAD_Mutations#22 · Filter by author Aerin13 opened on Jan 27, 2016

• HyPhy path in config file won't generate

  MorrellLAB/BAD_Mutations#15 · Filter by author Aerin13 opened on Dec 11, 2015
  1

  

• Installing dependencies error

  MorrellLAB/BAD_Mutations#14 · Filter by author ChaochihL opened on Dec 11, 2015
  

• Example setup code doesn't output usable config file

  MorrellLAB/BAD_Mutations#13 · Filter by author Aerin13 opened on Dec 8, 2015
  2

  

• BioPython check for fetch

  MorrellLAB/BAD_Mutations#6 · Filter by author mojaveazure opened on Mar 19, 2015
  4