From 6de92e00861da14df41859f98bdcb00d4a8fd71d Mon Sep 17 00:00:00 2001 From: stephantul Date: Tue, 4 Aug 2026 19:35:43 +0200 Subject: [PATCH 1/4] feat: refactor inference --- model2vec/inference/README.md | 2 +- model2vec/inference/__init__.py | 10 +- model2vec/inference/evaluation.py | 113 +++ model2vec/inference/mlp.py | 79 ++ model2vec/inference/model.py | 206 ++-- model2vec/train/README.md | 14 +- model2vec/train/base.py | 2 +- model2vec/train/classifier.py | 24 +- model2vec/train/utils.py | 89 +- pyproject.toml | 4 +- tests/test_inference.py | 26 +- uv.lock | 1490 +++++++++++++++++++++++++++-- 12 files changed, 1786 insertions(+), 273 deletions(-) create mode 100644 model2vec/inference/evaluation.py create mode 100644 model2vec/inference/mlp.py diff --git a/model2vec/inference/README.md b/model2vec/inference/README.md index a14c3e1d..deff5802 100644 --- a/model2vec/inference/README.md +++ b/model2vec/inference/README.md @@ -1,6 +1,6 @@ # Inference -This subpackage mainly contains helper functions for inference with trained models that have been exported to `scikit-learn` compatible pipelines. +This subpackage mainly contains helper functions for inference with trained classifier/projector heads, persisted as a `safetensors` file and `config.json` metadata. If you're looking for information on how to train a model, see [here](../train/README.md). diff --git a/model2vec/inference/__init__.py b/model2vec/inference/__init__.py index e2499442..99e521db 100644 --- a/model2vec/inference/__init__.py +++ b/model2vec/inference/__init__.py @@ -1,10 +1,4 @@ -from model2vec.utils import get_package_extras, importable - -_REQUIRED_EXTRA = "inference" - -for extra_dependency in get_package_extras("model2vec", _REQUIRED_EXTRA): - importable(extra_dependency, _REQUIRED_EXTRA) - -from model2vec.inference.model import StaticModelPipeline, evaluate_single_or_multi_label +from model2vec.inference.evaluation import evaluate_single_or_multi_label +from model2vec.inference.model import StaticModelPipeline __all__ = ["StaticModelPipeline", "evaluate_single_or_multi_label"] diff --git a/model2vec/inference/evaluation.py b/model2vec/inference/evaluation.py new file mode 100644 index 00000000..df1dcc64 --- /dev/null +++ b/model2vec/inference/evaluation.py @@ -0,0 +1,113 @@ +from __future__ import annotations + +from collections.abc import Iterable, Sequence +from typing import Any, cast + +import numpy as np + + +def _is_multi_label_shaped(y: list[int] | list[str] | list[list[int]] | list[list[str]]) -> bool: + """Check if the labels are in a multi-label shape.""" + return isinstance(y, (list, tuple)) and len(y) > 0 and isinstance(y[0], (list, tuple, set)) + + +def _one_hot(labels: Sequence[Any], classes: Sequence[Any]) -> np.ndarray: + """One-hot encode a flat sequence of labels against a fixed set of classes.""" + index = {label: position for position, label in enumerate(classes)} + encoded = np.zeros((len(labels), len(classes)), dtype=int) + for row, label in enumerate(labels): + encoded[row, index[label]] = 1 + return encoded + + +def _multi_hot(label_lists: Iterable[Iterable[Any]], classes: Sequence[Any]) -> np.ndarray: + """Multi-hot encode a sequence of label lists against a fixed set of classes.""" + index = {label: position for position, label in enumerate(classes)} + label_lists = list(label_lists) + encoded = np.zeros((len(label_lists), len(classes)), dtype=int) + for row, labels in enumerate(label_lists): + for label in labels: + encoded[row, index[label]] = 1 + return encoded + + +def _precision_recall_f1_support( + y_true: np.ndarray, y_pred: np.ndarray +) -> tuple[np.ndarray, np.ndarray, np.ndarray, np.ndarray]: + """Compute per-class precision, recall, f1, and support from one-hot / multi-hot encoded labels.""" + true_positive = ((y_true == 1) & (y_pred == 1)).sum(axis=0).astype(float) + false_positive = ((y_true == 0) & (y_pred == 1)).sum(axis=0).astype(float) + false_negative = ((y_true == 1) & (y_pred == 0)).sum(axis=0).astype(float) + support = y_true.sum(axis=0) + + predicted_positive = true_positive + false_positive + actual_positive = true_positive + false_negative + precision = np.divide( + true_positive, predicted_positive, out=np.zeros_like(true_positive), where=predicted_positive > 0 + ) + recall = np.divide(true_positive, actual_positive, out=np.zeros_like(true_positive), where=actual_positive > 0) + precision_plus_recall = precision + recall + f1 = np.divide( + 2 * precision * recall, precision_plus_recall, out=np.zeros_like(precision), where=precision_plus_recall > 0 + ) + + return precision, recall, f1, support + + +def evaluate_single_or_multi_label( + predictions: np.ndarray, + y: list[int] | list[str] | list[list[int]] | list[list[str]], +) -> dict[str, dict[str, float]]: + """Evaluate the classifier on a given dataset using a classification report. + + This function computes per-class precision, recall and f1-score (via one-vs-rest / multi-hot encoding), plus + overall accuracy, macro average, and weighted average. + + :param predictions: The predictions. + :param y: The ground truth labels. + :return: A classification report, as a dictionary. + """ + if _is_multi_label_shaped(y): + y = cast(list[list[str]] | list[list[int]], y) + predictions = cast(np.ndarray, predictions) + y_labels = {label for labels in y for label in labels} + predicted_labels = {label for labels in predictions for label in labels} + classes = sorted(y_labels | predicted_labels) + y_transformed = _multi_hot(y, classes) + predictions_transformed = _multi_hot(predictions, classes) + else: + y = cast(list[str] | list[int], y) + classes = sorted(set(y) | set(predictions.tolist())) + y_transformed = _one_hot(y, classes) + predictions_transformed = _one_hot(predictions.tolist(), classes) + + target_names = [str(c) for c in classes] + precision, recall, f1, support = _precision_recall_f1_support(y_transformed, predictions_transformed) + total_support = float(support.sum()) + accuracy = float(np.all(y_transformed == predictions_transformed, axis=1).mean()) + + report: dict[str, Any] = { + name: { + "precision": float(precision[idx]), + "recall": float(recall[idx]), + "f1-score": float(f1[idx]), + "support": float(support[idx]), + } + for idx, name in enumerate(target_names) + } + report["accuracy"] = accuracy + report["macro avg"] = { + "precision": float(precision.mean()), + "recall": float(recall.mean()), + "f1-score": float(f1.mean()), + "support": total_support, + } + weights = support / total_support if total_support > 0 else np.zeros_like(support, dtype=float) + report["weighted avg"] = { + "precision": float((precision * weights).sum()), + "recall": float((recall * weights).sum()), + "f1-score": float((f1 * weights).sum()), + "support": total_support, + } + + return report diff --git a/model2vec/inference/mlp.py b/model2vec/inference/mlp.py new file mode 100644 index 00000000..a1bcd519 --- /dev/null +++ b/model2vec/inference/mlp.py @@ -0,0 +1,79 @@ +from __future__ import annotations + +from dataclasses import dataclass +from enum import Enum + +import numpy as np + + +class Activation(str, Enum): + SOFTMAX = "softmax" + SIGMOID = "sigmoid" + IDENTITY = "identity" + + +def _softmax(x: np.ndarray) -> np.ndarray: + """Numerically stable softmax over the last axis.""" + shifted = x - x.max(axis=-1, keepdims=True) + exponentiated = np.exp(shifted) + return exponentiated / exponentiated.sum(axis=-1, keepdims=True) + + +def _sigmoid(x: np.ndarray) -> np.ndarray: + """Numerically stable sigmoid.""" + return np.where(x >= 0, 1 / (1 + np.exp(-x)), np.exp(x) / (1 + np.exp(x))) + + +@dataclass +class Layer: + weight: np.ndarray + bias: np.ndarray + + def __call__(self, x: np.ndarray) -> np.ndarray: + """Apply the linear transformation.""" + return x @ self.weight.T + self.bias + + +class MLPHead: + def __init__( + self, + layers: list[Layer], + activation: Activation, + classes: np.ndarray | None = None, + ) -> None: + """An MLP with ReLU activation. + + :param layers: The linear layers, in order. + :param activation: The output activation. + :param classes: The classes, if the task is a classification task. + """ + self.layers = layers + self.activation = activation + self.classes_ = classes + + def _logits(self, X: np.ndarray) -> np.ndarray: + """Run the forward through the layers.""" + out = X + *hidden_layers, last_layer = self.layers + for layer in hidden_layers: + out = np.maximum(layer(out), 0.0) + return last_layer(out) + + def predict_proba(self, X: np.ndarray) -> np.ndarray: + """Predict probabilities, applying the output activation to the raw logits.""" + logits = self._logits(X) + match self.activation: + case Activation.SOFTMAX: + return _softmax(logits) + case Activation.SIGMOID: + return _sigmoid(logits) + case Activation.IDENTITY: + return logits + + def predict_index(self, X: np.ndarray) -> np.ndarray: + """Predict the index of the most likely class.""" + return self._logits(X).argmax(axis=1) + + def predict_regression(self, X: np.ndarray) -> np.ndarray: + """Predict the raw (identity-activation) output, e.g. for a projector head.""" + return self._logits(X) diff --git a/model2vec/inference/model.py b/model2vec/inference/model.py index 5a56dd97..342df9fc 100644 --- a/model2vec/inference/model.py +++ b/model2vec/inference/model.py @@ -1,56 +1,34 @@ from __future__ import annotations -import re from collections.abc import Sequence -from enum import Enum from pathlib import Path from tempfile import TemporaryDirectory -from typing import TypeVar, cast +from typing import Any, TypeVar, cast import huggingface_hub import numpy as np -import skops.io -from sklearn.metrics import classification_report -from sklearn.neural_network import MLPClassifier, MLPRegressor -from sklearn.pipeline import Pipeline -from sklearn.preprocessing import MultiLabelBinarizer +from safetensors.numpy import load_file, save_file +from model2vec.inference.evaluation import evaluate_single_or_multi_label +from model2vec.inference.mlp import Activation, Layer, MLPHead from model2vec.model import PathLike, StaticModel -from model2vec.modelcards import create_model_card +from model2vec.persistence import save_pretrained -_DEFAULT_TRUST_PATTERN = re.compile(r"sklearn\..+") -_DEFAULT_MODEL_FILENAME = "pipeline.skops" +_DEFAULT_HEAD_FILENAME = "head.safetensors" LabelType = TypeVar("LabelType", list[str], list[list[str]]) -class HeadType(str, Enum): - CLASSIFIER = "classifier" - PROJECTOR = "projector" - MULTILABEL = "multilabel" - - class StaticModelPipeline: - def __init__(self, model: StaticModel, head: Pipeline) -> None: + def __init__(self, model: StaticModel, head: MLPHead) -> None: """Create a pipeline with a StaticModel encoder.""" self.model = model self.head = head - - last_head = self.head[-1] - self.classes_: None | np.ndarray = None - if isinstance(last_head, MLPRegressor): - self.classifier_type = HeadType.PROJECTOR - elif isinstance(last_head, MLPClassifier): - activation = last_head.out_activation_ - self.classifier_type = HeadType.MULTILABEL if activation == "logistic" else HeadType.CLASSIFIER - self.classes_ = self.head.classes_ - else: - # Default to classifier: the assumption is the user is unlikely to use multilabel here. - self.classifier_type = HeadType.CLASSIFIER + self.classes_ = head.classes_ @classmethod def from_pretrained( - cls: type[StaticModelPipeline], path: PathLike, token: str | None = None, trust_remote_code: bool = False + cls: type[StaticModelPipeline], path: PathLike, token: str | None = None ) -> StaticModelPipeline: """Load a StaticModel from a local path or huggingface hub path. @@ -58,17 +36,16 @@ def from_pretrained( :param path: The path to the folder containing the pipeline, or a repository on the Hugging Face Hub :param token: The token to use to download the pipeline from the hub. - :param trust_remote_code: Whether to trust the remote code. If this is False, we will only load components coming from `sklearn`. :return: The loaded pipeline. """ - model, head = _load_pipeline(path, token, trust_remote_code) + model, head = _load_pipeline(path, token) model.embedding = np.nan_to_num(model.embedding) return cls(model, head) def save_pretrained(self, path: str) -> None: """Save the model to a folder.""" - save_pipeline(self, path) + _save_pipeline(self, path) def push_to_hub( self, repo_id: str, subfolder: str | None = None, token: str | None = None, private: bool = False @@ -83,8 +60,7 @@ def push_to_hub( from model2vec.persistence import push_folder_to_hub with TemporaryDirectory() as temp_dir: - save_pipeline(self, temp_dir) - self.model.save_pretrained(temp_dir) + _save_pipeline(self, temp_dir) push_folder_to_hub(Path(temp_dir), subfolder, repo_id, private, token) def _encode_and_coerce_to_2d( @@ -140,15 +116,17 @@ def predict( multiprocessing_threshold=multiprocessing_threshold, ) - if self.classifier_type == HeadType.MULTILABEL: + if self.head.activation == Activation.IDENTITY: + return self.head.predict_regression(encoded) + + if self.head.activation == Activation.SIGMOID: assert self.classes_ is not None - out_labels = [] proba = self.head.predict_proba(encoded) - for vector in proba: - out_labels.append(self.classes_[vector > threshold]) + out_labels = [self.classes_[vector > threshold] for vector in proba] return np.asarray(out_labels, dtype=object) - return self.head.predict(encoded) + assert self.classes_ is not None + return self.classes_[self.head.predict_index(encoded)] def predict_proba( self, @@ -170,7 +148,7 @@ def predict_proba( :return: The predicted labels or probabilities. :raises ValueError: If the classifier type is projector. """ - if self.classifier_type == HeadType.PROJECTOR: + if self.head.activation == Activation.IDENTITY: raise ValueError("You are using evaluate on a projector model. This is not supported.") encoded = self._encode_and_coerce_to_2d( X, @@ -184,34 +162,29 @@ def predict_proba( return self.head.predict_proba(encoded) def evaluate( - self, X: Sequence[str], y: LabelType, batch_size: int = 1024, threshold: float = 0.5, output_dict: bool = False - ) -> str | dict[str, dict[str, float]]: - """Evaluate the classifier on a given dataset using scikit-learn's classification report. + self, X: Sequence[str], y: LabelType, batch_size: int = 1024, threshold: float = 0.5 + ) -> dict[str, dict[str, float]]: + """Evaluate the classifier on a given dataset using a classification report. :param X: The texts to predict on. :param y: The ground truth labels. :param batch_size: The batch size. :param threshold: The threshold for multilabel classification. - :param output_dict: Whether to output the classification report as a dictionary. - :return: A classification report. + :return: A classification report, as a dictionary. :raises ValueError: If the classifier type is projector. """ - if self.classifier_type == HeadType.PROJECTOR: + if self.head.activation == Activation.IDENTITY: raise ValueError("You are using evaluate on a projector model. This is not supported.") predictions = self.predict(X, show_progress_bar=True, batch_size=batch_size, threshold=threshold) - report = evaluate_single_or_multi_label(predictions=predictions, y=y, output_dict=output_dict) - - return report + return evaluate_single_or_multi_label(predictions=predictions, y=y) -def _load_pipeline( - folder_or_repo_path: PathLike, token: str | None = None, trust_remote_code: bool = False -) -> tuple[StaticModel, Pipeline]: - """Load a model and an sklearn pipeline. +def _load_pipeline(folder_or_repo_path: PathLike, token: str | None = None) -> tuple[StaticModel, MLPHead]: + """Load a model and its head. This assumes the following files are present in the repo: - - `pipeline.skops`: The head of the pipeline. - - `config.json`: The configuration of the model. + - `head.safetensors`: The weights of the head. + - `config.json`: The configuration of the model, including the head's metadata. - `model.safetensors`: The weights of the model. - `tokenizer.json`: The tokenizer of the model. @@ -219,40 +192,40 @@ def _load_pipeline( :param token: The token to use to download the pipeline from the hub. If this is None, you will only be able to load the pipeline from a local folder, public repository, or a repository that you have access to because you are logged in. - :param trust_remote_code: Whether to trust the remote code. If this is False, - we will only load components coming from `sklearn`. If this is True, we will load all components. - If you set this to True, you are responsible for whatever happens. :return: The encoder model and the loaded head - :raises FileNotFoundError: If the pipeline file does not exist in the folder. - :raises ValueError: If an untrusted type is found in the pipeline, and `trust_remote_code` is False. + :raises FileNotFoundError: If the head file does not exist in the folder. """ folder_or_repo_path = Path(folder_or_repo_path) - model_filename = _DEFAULT_MODEL_FILENAME - head_pipeline_path: str | Path + head_path: str | Path if folder_or_repo_path.exists(): - head_pipeline_path = folder_or_repo_path / model_filename - if not head_pipeline_path.exists(): - raise FileNotFoundError(f"Pipeline file does not exist in {folder_or_repo_path}") + head_path = folder_or_repo_path / _DEFAULT_HEAD_FILENAME + if not head_path.exists(): + raise FileNotFoundError(f"Head file does not exist in {folder_or_repo_path}") else: - head_pipeline_path = huggingface_hub.hf_hub_download( - folder_or_repo_path.as_posix(), model_filename, token=token - ) + head_path = huggingface_hub.hf_hub_download(folder_or_repo_path.as_posix(), _DEFAULT_HEAD_FILENAME, token=token) model = StaticModel.from_pretrained(folder_or_repo_path) - unknown_types = skops.io.get_untrusted_types(file=head_pipeline_path) - # If the user does not trust remote code, we should check that the unknown types are trusted. - # By default, we trust everything coming from scikit-learn. - if not trust_remote_code: - for t in unknown_types: - if not _DEFAULT_TRUST_PATTERN.match(t): - raise ValueError(f"Untrusted type {t}.") - head = skops.io.load(head_pipeline_path, trusted=unknown_types) + head_config = cast(dict[str, Any], model.config.get("head_config", {})) + activation = Activation(head_config.get("activation", Activation.IDENTITY.value)) + n_layers = head_config.get("n_layers", 0) + classes = head_config.get("classes") + + tensors = load_file(head_path) + layers = [ + Layer(weight=tensors[f"head.{index}.weight"], bias=tensors[f"head.{index}.bias"]) for index in range(n_layers) + ] + + head = MLPHead( + layers=layers, + activation=activation, + classes=np.asarray(classes) if classes is not None else None, + ) return model, head -def save_pipeline(pipeline: StaticModelPipeline, folder_path: str | Path) -> None: +def _save_pipeline(pipeline: StaticModelPipeline, folder_path: str | Path) -> None: """Save a pipeline to a folder. :param pipeline: The pipeline to save. @@ -260,61 +233,38 @@ def save_pipeline(pipeline: StaticModelPipeline, folder_path: str | Path) -> Non """ folder_path = Path(folder_path) folder_path.mkdir(parents=True, exist_ok=True) - model_filename = _DEFAULT_MODEL_FILENAME - head_pipeline_path = folder_path / model_filename - skops.io.dump(pipeline.head, head_pipeline_path) - pipeline.model.save_pretrained(folder_path) - base_model_name = pipeline.model.base_model_name + + head = pipeline.head + tensors: dict[str, np.ndarray] = {} + for index, layer in enumerate(head.layers): + tensors[f"head.{index}.weight"] = layer.weight + tensors[f"head.{index}.bias"] = layer.bias + save_file(tensors, folder_path / _DEFAULT_HEAD_FILENAME) + + model = pipeline.model + config = dict(model.config) + config["head_config"] = { + "n_layers": len(head.layers), + "activation": head.activation.value, + "classes": np.asarray(pipeline.classes_).tolist() if pipeline.classes_ is not None else None, + } + + base_model_name = model.base_model_name if isinstance(base_model_name, list) and base_model_name: name = base_model_name[0] elif isinstance(base_model_name, str): name = base_model_name else: name = "unknown" - create_model_card( - folder_path, + + save_pretrained( + folder_path=folder_path, + embeddings=model.embedding, + tokenizer=model.tokenizer, + config=config, base_model_name=name, - language=pipeline.model.language, + language=model.language, + weights=model.weights, + mapping=model.token_mapping, template_path="classifier_template.md", ) - - -def _is_multi_label_shaped(y: list[int] | list[str] | list[list[int]] | list[list[str]]) -> bool: - """Check if the labels are in a multi-label shape.""" - return isinstance(y, (list, tuple)) and len(y) > 0 and isinstance(y[0], (list, tuple, set)) - - -def evaluate_single_or_multi_label( - predictions: np.ndarray, - y: list[int] | list[str] | list[list[int]] | list[list[str]], - output_dict: bool = False, -) -> str | dict[str, dict[str, float]]: - """Evaluate the classifier on a given dataset using scikit-learn's classification report. - - :param predictions: The predictions. - :param y: The ground truth labels. - :param output_dict: Whether to output the classification report as a dictionary. - :return: A classification report. - """ - if _is_multi_label_shaped(y): - # Cast because the type checker doesn't understand that y is a list of lists. - y = cast(list[list[str]] | list[list[int]], y) - classes = sorted(set([label for labels in y for label in labels])) - mlb = MultiLabelBinarizer(classes=classes) - y_transformed = mlb.fit_transform(y) - predictions_transformed = mlb.transform(predictions) - else: - if all(isinstance(label, (str, int)) for label in y): - y = cast(list[str] | list[int], y) - classes = sorted(set(y)) - y_transformed = np.array(y) - predictions_transformed = np.array(predictions) - - report = classification_report( - y_transformed, - predictions_transformed, - output_dict=output_dict, - zero_division=0, # type: ignore # incorrect type in sklearn. - ) - - return report diff --git a/model2vec/train/README.md b/model2vec/train/README.md index e6399c5b..e5aab128 100644 --- a/model2vec/train/README.md +++ b/model2vec/train/README.md @@ -1,6 +1,6 @@ # Training -Aside from [distillation](../../README.md#distillation), `model2vec` also supports training simple classifiers on top of static models, using [pytorch](https://pytorch.org/) and [scikit-learn](https://scikit-learn.org/stable/index.html). +Aside from [distillation](../../README.md#distillation), `model2vec` also supports training simple classifiers on top of static models, using [pytorch](https://pytorch.org/). We support both single and multi-label classification, which work seamlessly based on the labels you provide. @@ -91,28 +91,22 @@ classifier.fit(ds["train"]["text"], ds["train"]["labels"]) Then, we can evaluate the classifier: ```python -from sklearn import metrics -from sklearn.preprocessing import MultiLabelBinarizer - classification_report = classifier.evaluate(ds["test"]["text"], ds["test"]["labels"], threshold=0.3) print(classification_report) -# Accuracy: 0.410 -# Precision: 0.527 -# Recall: 0.410 -# F1: 0.439 +# {'accuracy': 0.41, 'macro avg': {'precision': 0.527, 'recall': 0.41, 'f1-score': 0.439, ...}, ...} ``` The scores are competitive with the popular [roberta-base-go_emotions](https://huggingface.co/SamLowe/roberta-base-go_emotions) model, while our model is orders of magnitude faster. # Persistence -You can turn a classifier into a scikit-learn compatible pipeline, as follows: +You can turn a classifier into a lightweight inference pipeline, as follows: ```python pipeline = classifier.to_pipeline() ``` -This pipeline object can be persisted using standard pickle-based methods, such as [joblib](https://joblib.readthedocs.io/en/stable/). This makes it easy to use your model in inferene pipelines (no installing torch!), although `joblib` and `pickle` should not be used to share models outside of your organization. +This strips away `torch`: the head's weights are plain `numpy` arrays, so the resulting `StaticModelPipeline` can be used for inference without installing `torch`. If you want to persist your pipeline to the Hugging Face hub, you can use our built-in functions: diff --git a/model2vec/train/base.py b/model2vec/train/base.py index e27da01c..16a032c2 100644 --- a/model2vec/train/base.py +++ b/model2vec/train/base.py @@ -266,7 +266,7 @@ def to_static_model(self) -> StaticModel: ) def to_pipeline(self) -> StaticModelPipeline: - """Convert the model to an sklearn pipeline.""" + """Convert the model to an inference pipeline.""" return to_pipeline(self) def _determine_batch_size(self, batch_size: int | None, train_length: int) -> int: diff --git a/model2vec/train/classifier.py b/model2vec/train/classifier.py index e771c415..7190fc1f 100644 --- a/model2vec/train/classifier.py +++ b/model2vec/train/classifier.py @@ -7,7 +7,6 @@ import numpy as np import torch -from sklearn.metrics import jaccard_score from tokenizers import Tokenizer from torch import nn from tqdm import trange @@ -27,10 +26,18 @@ def _classifier_metrics(head_out: torch.Tensor, y: torch.Tensor, loss: torch.Ten return {"val_loss": loss.item(), "val_accuracy": accuracy.item()} +def _compute_accuracy(y_true: torch.Tensor, y_pred: torch.Tensor) -> float: + """Compute the multilabel accuracy score, averaged over samples.""" + intersection = (y_true * y_pred).sum(dim=1) + union = ((y_true + y_pred) > 0).float().sum(dim=1) + scores = torch.where(union > 0, intersection / union, torch.zeros_like(union)) + return scores.mean().item() + + def _multilabel_classifier_metrics(head_out: torch.Tensor, y: torch.Tensor, loss: torch.Tensor) -> dict[str, float]: """Validation metrics for multi-label classification: loss and Jaccard accuracy.""" preds = (torch.sigmoid(head_out) > 0.5).float() - accuracy = cast(float, jaccard_score(y.cpu(), preds.cpu(), average="samples")) + accuracy = _compute_accuracy(y, preds) return {"val_loss": loss.item(), "val_accuracy": accuracy} @@ -233,22 +240,19 @@ def _determine_class_weight( return torch.tensor(weights, dtype=torch.float32) def evaluate( - self, X: list[str], y: LabelType, batch_size: int = 1024, threshold: float = 0.5, output_dict: bool = False - ) -> str | dict[str, dict[str, float]]: - """Evaluate the classifier on a given dataset using scikit-learn's classification report. + self, X: list[str], y: LabelType, batch_size: int = 1024, threshold: float = 0.5 + ) -> dict[str, dict[str, float]]: + """Evaluate the classifier on a given dataset. :param X: The texts to predict on. :param y: The ground truth labels. :param batch_size: The batch size. :param threshold: The threshold for multilabel classification. - :param output_dict: Whether to output the classification report as a dictionary. - :return: A classification report. + :return: A classification report, as a dictionary. """ self.eval() predictions = self.predict(X, show_progress_bar=True, batch_size=batch_size, threshold=threshold) - report = evaluate_single_or_multi_label(predictions=predictions, y=y, output_dict=output_dict) - - return report + return evaluate_single_or_multi_label(predictions=predictions, y=y) def _initialize_on_labels(self, y: LabelType) -> None: """Sets the output dimensionality, the classes, and initializes the head. diff --git a/model2vec/train/utils.py b/model2vec/train/utils.py index d9c115f3..e8877282 100644 --- a/model2vec/train/utils.py +++ b/model2vec/train/utils.py @@ -2,18 +2,16 @@ import logging import random -from collections import Counter -from typing import TYPE_CHECKING +from collections import Counter, defaultdict +from typing import TYPE_CHECKING, Any import numpy as np import torch -from sklearn.model_selection import train_test_split as sklearn_split -from sklearn.neural_network import MLPClassifier, MLPRegressor -from sklearn.pipeline import make_pipeline from tokenizers import Tokenizer from torch import nn from model2vec.inference import StaticModelPipeline +from model2vec.inference.mlp import Activation, Layer, MLPHead if TYPE_CHECKING: from model2vec.train.base import BaseFinetuneable @@ -41,34 +39,34 @@ def get_probable_pad_token_id(tokenizer: Tokenizer) -> int: def to_pipeline(model: "BaseFinetuneable | StaticModelForClassification") -> StaticModelPipeline: - """Convert the model to an sklearn pipeline.""" + """Convert the model to an inference pipeline.""" from model2vec.train.classifier import StaticModelForClassification static_model = model.to_static_model() - random_state = np.random.RandomState(42) - n_items = model.out_dim - X = random_state.randn(n_items, static_model.dim) - y: np.ndarray | list[str] + layers = [ + Layer(weight=module.weight.detach().cpu().numpy(), bias=module.bias.detach().cpu().numpy()) + for module in model.head + if isinstance(module, nn.Linear) + ] + + classes: np.ndarray | None = None if isinstance(model, StaticModelForClassification): - y = model.classes_ - mlp_head = MLPClassifier(hidden_layer_sizes=(model.hidden_dim,) * model.n_layers) - activation = "logistic" if model.multilabel else "softmax" + classes = np.asarray(model.classes_) + activation = Activation.SIGMOID if model.multilabel else Activation.SOFTMAX else: - y = random_state.randn(n_items, n_items) - mlp_head = MLPRegressor(hidden_layer_sizes=(model.hidden_dim,) * model.n_layers) - activation = "identity" - mlp_head.fit(X, y) + activation = Activation.IDENTITY + + head = MLPHead(layers=layers, activation=activation, classes=classes) - for index, layer in enumerate([module for module in model.head if isinstance(module, nn.Linear)]): - mlp_head.coefs_[index] = layer.weight.detach().cpu().numpy().T - mlp_head.intercepts_[index] = layer.bias.detach().cpu().numpy() + return StaticModelPipeline(static_model, head) - mlp_head.n_outputs_ = model.out_dim - mlp_head.out_activation_ = activation - pipeline = make_pipeline(mlp_head) - return StaticModelPipeline(static_model, pipeline) +def _index(sequence: Any, indices: list[int]) -> Any: + """Index a sequence with a list of indices, preserving the container type.""" + if isinstance(sequence, list): + return [sequence[index] for index in indices] + return sequence[indices] def train_test_split( @@ -81,15 +79,46 @@ def train_test_split( For single-label classification, stratification is attempted (if possible). For multilabel classification, a random split is performed. """ - stratify_data = None - if isinstance(y, list) and isinstance(y[0], (str, int)): + rng = random.Random(DEFAULT_RANDOM_SEED) + n = len(X) + + stratify = isinstance(y, list) and len(y) > 0 and isinstance(y[0], (str, int)) + if stratify: label_counts = Counter(y) if min(label_counts.values()) < 2: logger.info("Some classes have fewer than 2 samples. Stratification is disabled.") - stratify_data = None - else: - stratify_data = y - return sklearn_split(X, y, test_size=test_size, random_state=42, shuffle=True, stratify=stratify_data) # type: ignore + stratify = False + + train_indices: list[int] + test_indices: list[int] + if stratify: + indices_by_label: dict[Any, list[int]] = defaultdict(list) + for index, label in enumerate(y): + indices_by_label[label].append(index) + + train_indices = [] + test_indices = [] + for indices in indices_by_label.values(): + indices = indices[:] + rng.shuffle(indices) + n_test = min(max(1, round(len(indices) * test_size)), len(indices) - 1) + test_indices.extend(indices[:n_test]) + train_indices.extend(indices[n_test:]) + rng.shuffle(train_indices) + rng.shuffle(test_indices) + else: + indices = list(range(n)) + rng.shuffle(indices) + n_test = min(max(1, round(n * test_size)), max(n - 1, 0)) + test_indices = indices[:n_test] + train_indices = indices[n_test:] + + X_train = _index(X, train_indices) + X_test = _index(X, test_indices) + y_train = _index(y, train_indices) + y_test = _index(y, test_indices) + + return X_train, X_test, y_train, y_test def seed_everything(seed: int) -> None: diff --git a/pyproject.toml b/pyproject.toml index 70f0a1f4..cc6c2fd1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -60,9 +60,7 @@ dev = [ distill = ["torch", "transformers<5.4.0", "scikit-learn", "skeletoken>=0.4.0,<0.5.0"] onnx = ["onnx", "torch"] -# train also installs inference -train = ["torch", "scikit-learn", "skops"] -inference = ["scikit-learn", "skops"] +train = ["torch"] quantization = ["scikit-learn"] integration = ["mteb"] diff --git a/tests/test_inference.py b/tests/test_inference.py index fea74ad8..7cbe77cb 100644 --- a/tests/test_inference.py +++ b/tests/test_inference.py @@ -1,17 +1,16 @@ import os -import re from tempfile import TemporaryDirectory -from unittest.mock import patch import pytest -from model2vec.inference.model import HeadType, StaticModelPipeline +from model2vec.inference.mlp import Activation +from model2vec.inference.model import StaticModelPipeline def test_init_predict(mock_inference_pipeline: StaticModelPipeline) -> None: """Test successful init and predict with StaticModelPipeline.""" target: list[str] | list[list[str]] - if mock_inference_pipeline.classifier_type == HeadType.MULTILABEL: + if mock_inference_pipeline.head.activation == Activation.SIGMOID: assert mock_inference_pipeline.classes_ is not None if isinstance(mock_inference_pipeline.classes_[0], str): target = [["a", "b"]] @@ -29,7 +28,7 @@ def test_init_predict(mock_inference_pipeline: StaticModelPipeline) -> None: def test_init_predict_projector(mock_inference_pipeline_projector: StaticModelPipeline) -> None: """Test successful init and predict with StaticModelPipeline.""" - assert mock_inference_pipeline_projector.classifier_type == HeadType.PROJECTOR + assert mock_inference_pipeline_projector.head.activation == Activation.IDENTITY assert mock_inference_pipeline_projector.classes_ is None with pytest.raises(ValueError): mock_inference_pipeline_projector.predict_proba(["dog"]) @@ -49,7 +48,7 @@ def test_init_predict_proba(mock_inference_pipeline: StaticModelPipeline) -> Non def test_init_evaluate(mock_inference_pipeline: StaticModelPipeline) -> None: """Test successful init and evaluate with StaticModelPipeline.""" target: list[str] | list[list[str]] - if mock_inference_pipeline.classifier_type == HeadType.MULTILABEL: + if mock_inference_pipeline.head.activation == Activation.SIGMOID: assert mock_inference_pipeline.classes_ is not None if isinstance(mock_inference_pipeline.classes_[0], str): target = [["a", "b"]] @@ -70,7 +69,7 @@ def test_roundtrip_save(mock_inference_pipeline: StaticModelPipeline) -> None: mock_inference_pipeline.save_pretrained(temp_dir) loaded = StaticModelPipeline.from_pretrained(temp_dir) target: list[str] | list[list[str]] - if mock_inference_pipeline.classifier_type == HeadType.MULTILABEL: + if mock_inference_pipeline.head.activation == Activation.SIGMOID: assert mock_inference_pipeline.classes_ is not None if isinstance(mock_inference_pipeline.classes_[0], str): target = [["a", "b"]] @@ -88,20 +87,11 @@ def test_roundtrip_save(mock_inference_pipeline: StaticModelPipeline) -> None: assert loaded.predict_proba(["dog"]).argmax(1).tolist() == [1] -@patch("model2vec.inference.model._DEFAULT_TRUST_PATTERN", re.compile("torch")) -def test_roundtrip_save_mock_trust_pattern(mock_inference_pipeline: StaticModelPipeline) -> None: - """Test saving and loading the pipeline.""" - with TemporaryDirectory() as temp_dir: - mock_inference_pipeline.save_pretrained(temp_dir) - with pytest.raises(ValueError): - StaticModelPipeline.from_pretrained(temp_dir) - - def test_roundtrip_save_file_gone(mock_inference_pipeline: StaticModelPipeline) -> None: """Test saving and loading the pipeline.""" with TemporaryDirectory() as temp_dir: mock_inference_pipeline.save_pretrained(temp_dir) - # Rename the file to abc.pipeline, so that it looks like it was downloaded from the hub - os.unlink(os.path.join(temp_dir, "pipeline.skops")) + # Remove the head file, so that it looks like it was never saved + os.unlink(os.path.join(temp_dir, "head.safetensors")) with pytest.raises(FileNotFoundError): StaticModelPipeline.from_pretrained(temp_dir) diff --git a/uv.lock b/uv.lock index bf59e266..0658fe54 100644 --- a/uv.lock +++ b/uv.lock @@ -2,9 +2,18 @@ version = 1 revision = 3 requires-python = ">=3.10" resolution-markers = [ - "python_full_version >= '3.13'", - "python_full_version == '3.12.*'", - "python_full_version == '3.11.*'", + "python_full_version >= '3.14' and sys_platform == 'win32'", + "python_full_version >= '3.14' and sys_platform == 'emscripten'", + "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'win32'", + "python_full_version == '3.13.*' and sys_platform == 'emscripten'", + 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StaticModelPipeline) os.unlink(os.path.join(temp_dir, "head.safetensors")) with pytest.raises(FileNotFoundError): StaticModelPipeline.from_pretrained(temp_dir) + + +def test_mlp_head_predict_proba_identity() -> None: + """Test that predict_proba returns the raw logits for an identity activation.""" + layer = Layer(weight=np.eye(3), bias=np.zeros(3)) + head = MLPHead(layers=[layer], activation=Activation.IDENTITY) + + X = np.array([[1.0, -2.0, 3.0]]) + proba = head.predict_proba(X) + + assert np.allclose(proba, X) + + +def test_load_pipeline_from_hub(mock_inference_pipeline: StaticModelPipeline) -> None: + """Test that a repo id that isn't a local path is downloaded from the hub.""" + with TemporaryDirectory() as temp_dir: + mock_inference_pipeline.save_pretrained(temp_dir) + downloaded_model = StaticModel.from_pretrained(temp_dir) + head_path = os.path.join(temp_dir, "head.safetensors") + + with ( + patch("model2vec.inference.model.huggingface_hub.hf_hub_download", return_value=head_path) as mock_download, + patch("model2vec.inference.model.StaticModel.from_pretrained", return_value=downloaded_model), + ): + loaded = StaticModelPipeline.from_pretrained("fake/repo-id") + + mock_download.assert_called_once_with("fake/repo-id", "head.safetensors", token=None) + assert loaded.predict(["dog"]).tolist() == mock_inference_pipeline.predict(["dog"]).tolist() + + +def test_push_to_hub(mock_inference_pipeline: StaticModelPipeline) -> None: + """Test that push_to_hub saves the pipeline to a temp folder before pushing it to the hub.""" + captured: dict[str, object] = {} + + def _capture_upload( + folder_path: Path, subfolder: str | None, repo_id: str, private: bool, token: str | None + ) -> None: + captured["files"] = sorted(p.name for p in folder_path.iterdir()) + captured["repo_id"] = repo_id + captured["private"] = private + + with patch("model2vec.persistence.push_folder_to_hub", side_effect=_capture_upload) as mock_push: + mock_inference_pipeline.push_to_hub("fake/repo-id", private=True) + + mock_push.assert_called_once() + assert captured["repo_id"] == "fake/repo-id" + assert captured["private"] is True + assert "head.safetensors" in captured["files"] # type: ignore[operator] From 46cfd3df20c23e3842462d18362a77389d7ad8f1 Mon Sep 17 00:00:00 2001 From: stephantul Date: Wed, 5 Aug 2026 09:53:20 +0200 Subject: [PATCH 3/4] test coverage --- model2vec/inference/README.md | 13 +++ model2vec/inference/__init__.py | 4 +- model2vec/inference/model.py | 101 ++++++++++++++++- tests/test_inference.py | 186 +++++++++++++++++++++++++++++++- 4 files changed, 298 insertions(+), 6 deletions(-) diff --git a/model2vec/inference/README.md b/model2vec/inference/README.md index deff5802..74f3c5b4 100644 --- a/model2vec/inference/README.md +++ b/model2vec/inference/README.md @@ -16,3 +16,16 @@ label = classifier.predict("Attitudes towards cattle in the Alps: a study in let ``` This should just work. + +# Migrating a legacy pipeline + +Pipelines saved by older versions of model2vec store the head as a `scikit-learn`/`skops` `pipeline.skops` file instead of `head.safetensors`. `from_pretrained` still loads these automatically, falling back to the legacy format and emitting a warning. This requires `scikit-learn` and `skops` to be installed. + +To upgrade a pipeline to the current format (and silence the warning), convert it with `convert_legacy_pipeline` and save the result: + +```python +from model2vec.inference import convert_legacy_pipeline + +pipeline = convert_legacy_pipeline("path/or/repo-id/of/legacy/pipeline") +pipeline.save_pretrained("path/to/save") +``` diff --git a/model2vec/inference/__init__.py b/model2vec/inference/__init__.py index 99e521db..3b2961e3 100644 --- a/model2vec/inference/__init__.py +++ b/model2vec/inference/__init__.py @@ -1,4 +1,4 @@ from model2vec.inference.evaluation import evaluate_single_or_multi_label -from model2vec.inference.model import StaticModelPipeline +from model2vec.inference.model import StaticModelPipeline, convert_legacy_pipeline -__all__ = ["StaticModelPipeline", "evaluate_single_or_multi_label"] +__all__ = ["StaticModelPipeline", "convert_legacy_pipeline", "evaluate_single_or_multi_label"] diff --git a/model2vec/inference/model.py b/model2vec/inference/model.py index 342df9fc..ffd3845b 100644 --- a/model2vec/inference/model.py +++ b/model2vec/inference/model.py @@ -1,5 +1,6 @@ from __future__ import annotations +import warnings from collections.abc import Sequence from pathlib import Path from tempfile import TemporaryDirectory @@ -7,6 +8,7 @@ import huggingface_hub import numpy as np +from huggingface_hub.errors import EntryNotFoundError from safetensors.numpy import load_file, save_file from model2vec.inference.evaluation import evaluate_single_or_multi_label @@ -15,6 +17,7 @@ from model2vec.persistence import save_pretrained _DEFAULT_HEAD_FILENAME = "head.safetensors" +_LEGACY_HEAD_FILENAME = "pipeline.skops" LabelType = TypeVar("LabelType", list[str], list[list[str]]) @@ -34,6 +37,10 @@ def from_pretrained( NOTE: if you load a private model from the huggingface hub, you need to pass a token. + NOTE: if the pipeline was saved by an older version of model2vec (a `pipeline.skops` file instead of + `head.safetensors`), this falls back to loading it as a legacy pipeline and emits a warning. This requires + `scikit-learn` and `skops` to be installed. See `convert_legacy_pipeline` to upgrade it to the current format. + :param path: The path to the folder containing the pipeline, or a repository on the Hugging Face Hub :param token: The token to use to download the pipeline from the hub. :return: The loaded pipeline. @@ -193,16 +200,23 @@ def _load_pipeline(folder_or_repo_path: PathLike, token: str | None = None) -> t be able to load the pipeline from a local folder, public repository, or a repository that you have access to because you are logged in. :return: The encoder model and the loaded head - :raises FileNotFoundError: If the head file does not exist in the folder. + :raises FileNotFoundError: If neither the head file nor a legacy pipeline file exist in the folder. """ folder_or_repo_path = Path(folder_or_repo_path) head_path: str | Path if folder_or_repo_path.exists(): head_path = folder_or_repo_path / _DEFAULT_HEAD_FILENAME if not head_path.exists(): - raise FileNotFoundError(f"Head file does not exist in {folder_or_repo_path}") + if not (folder_or_repo_path / _LEGACY_HEAD_FILENAME).exists(): + raise FileNotFoundError(f"Head file does not exist in {folder_or_repo_path}") + return _load_legacy_pipeline(folder_or_repo_path, token) else: - head_path = huggingface_hub.hf_hub_download(folder_or_repo_path.as_posix(), _DEFAULT_HEAD_FILENAME, token=token) + try: + head_path = huggingface_hub.hf_hub_download( + folder_or_repo_path.as_posix(), _DEFAULT_HEAD_FILENAME, token=token + ) + except EntryNotFoundError: + return _load_legacy_pipeline(folder_or_repo_path, token) model = StaticModel.from_pretrained(folder_or_repo_path) @@ -225,6 +239,87 @@ def _load_pipeline(folder_or_repo_path: PathLike, token: str | None = None) -> t return model, head +def _load_legacy_pipeline(folder_or_repo_path: PathLike, token: str | None) -> tuple[StaticModel, MLPHead]: + """Load a model and its head from a legacy (scikit-learn/skops based) pipeline.""" + _legacy_warning = ( + f"No `{_DEFAULT_HEAD_FILENAME}` found for {folder_or_repo_path}; falling back to the legacy " + f"`{_LEGACY_HEAD_FILENAME}` format. Save this pipeline with `save_pretrained` to upgrade it." + ) + warnings.warn(_legacy_warning, stacklevel=3) + converted = convert_legacy_pipeline(folder_or_repo_path, token=token) + return converted.model, converted.head + + +def convert_legacy_pipeline( + path: PathLike, token: str | None = None, trust_remote_code: bool = False +) -> StaticModelPipeline: + """Convert an old-style (scikit-learn/skops based) `StaticModelPipeline` to the current, safetensors-based format. + + This requires `scikit-learn` and `skops` to be installed. + + :param path: The path to a local folder, or a repository on the Hugging Face Hub, containing a legacy pipeline + saved as a `pipeline.skops` file. + :param token: The token to use to download the pipeline from the hub. + :param trust_remote_code: Whether to trust the remote code in the skops file. If this is False, we will only + load components coming from `sklearn`. + :return: A new-style `StaticModelPipeline`, which can be persisted with `save_pretrained` or `push_to_hub`. + :raises ImportError: If `scikit-learn` and `skops` are not installed. + :raises FileNotFoundError: If the pipeline file does not exist in the folder. + :raises ValueError: If an untrusted type is found in the pipeline, or the head is not an MLP with a supported + hidden activation. + """ + import re + + try: + import skops.io + from sklearn.neural_network import MLPClassifier, MLPRegressor + from sklearn.pipeline import Pipeline + except ImportError as exc: + raise ImportError("Converting a legacy pipeline requires `scikit-learn` and `skops`. ") from exc + + folder_or_repo_path = Path(path) + legacy_head_path: str | Path + if folder_or_repo_path.exists(): + legacy_head_path = folder_or_repo_path / _LEGACY_HEAD_FILENAME + if not legacy_head_path.exists(): + raise FileNotFoundError(f"Pipeline file does not exist in {folder_or_repo_path}") + else: + legacy_head_path = huggingface_hub.hf_hub_download( + folder_or_repo_path.as_posix(), _LEGACY_HEAD_FILENAME, token=token + ) + + model = StaticModel.from_pretrained(folder_or_repo_path) + model.embedding = np.nan_to_num(model.embedding) + + untrusted_types = skops.io.get_untrusted_types(file=legacy_head_path) + if not trust_remote_code: + trusted_pattern = re.compile(r"sklearn\..+") + for untrusted_type in untrusted_types: + if not trusted_pattern.match(untrusted_type): + raise ValueError(f"Untrusted type {untrusted_type}.") + legacy_pipeline = cast(Pipeline, skops.io.load(legacy_head_path, trusted=untrusted_types)) + legacy_head = legacy_pipeline[-1] + + if isinstance(legacy_head, MLPRegressor): + activation = Activation.IDENTITY + classes = None + elif isinstance(legacy_head, MLPClassifier): + activation = Activation.SIGMOID if legacy_head.out_activation_ == "logistic" else Activation.SOFTMAX + classes = np.asarray(legacy_head.classes_) + else: + raise ValueError(f"Unsupported legacy head type: {type(legacy_head)}. Expected MLPClassifier or MLPRegressor.") + + if legacy_head.activation != "relu": + raise ValueError(f"Unsupported hidden activation: {legacy_head.activation}. Only `relu` is supported.") + + layers = [ + Layer(weight=coef.T, bias=intercept) for coef, intercept in zip(legacy_head.coefs_, legacy_head.intercepts_) + ] + head = MLPHead(layers=layers, activation=activation, classes=classes) + + return StaticModelPipeline(model, head) + + def _save_pipeline(pipeline: StaticModelPipeline, folder_path: str | Path) -> None: """Save a pipeline to a folder. diff --git a/tests/test_inference.py b/tests/test_inference.py index 3a203ea3..78e78c46 100644 --- a/tests/test_inference.py +++ b/tests/test_inference.py @@ -1,13 +1,19 @@ import os +import sys from pathlib import Path from tempfile import TemporaryDirectory from unittest.mock import patch import numpy as np import pytest +import skops.io +from huggingface_hub.errors import EntryNotFoundError +from sklearn.neural_network import MLPClassifier, MLPRegressor +from sklearn.pipeline import make_pipeline +from sklearn.preprocessing import StandardScaler from model2vec.inference.mlp import Activation, Layer, MLPHead -from model2vec.inference.model import StaticModelPipeline +from model2vec.inference.model import StaticModelPipeline, convert_legacy_pipeline from model2vec.model import StaticModel @@ -147,3 +153,181 @@ def _capture_upload( assert captured["repo_id"] == "fake/repo-id" assert captured["private"] is True assert "head.safetensors" in captured["files"] # type: ignore[operator] + + +def _dump_legacy_pipeline(temp_dir: str, model: StaticModel, legacy_pipeline: object) -> None: + model.save_pretrained(temp_dir) + skops.io.dump(legacy_pipeline, os.path.join(temp_dir, "pipeline.skops")) + + +def test_convert_legacy_pipeline_softmax(mock_static_model: StaticModel) -> None: + """Test converting a legacy single-label classifier pipeline.""" + rng = np.random.RandomState(0) + X = rng.randn(30, mock_static_model.dim) + y = np.array(["a", "b", "c"] * 10) + mlp = MLPClassifier(hidden_layer_sizes=(8,), max_iter=1, random_state=0).fit(X, y) + legacy_pipeline = make_pipeline(mlp) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + converted = convert_legacy_pipeline(temp_dir) + + assert converted.head.activation == Activation.SOFTMAX + encoded = mock_static_model.encode(["dog", "cat"]) + assert converted.predict(["dog", "cat"]).tolist() == legacy_pipeline.predict(encoded).tolist() + + +def test_convert_legacy_pipeline_sigmoid(mock_static_model: StaticModel) -> None: + """Test converting a legacy multilabel classifier pipeline.""" + rng = np.random.RandomState(0) + X = rng.randn(30, mock_static_model.dim) + y = rng.randint(0, 2, size=(30, 3)) + mlp = MLPClassifier(hidden_layer_sizes=(8,), max_iter=1, random_state=0).fit(X, y) + legacy_pipeline = make_pipeline(mlp) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + converted = convert_legacy_pipeline(temp_dir) + + assert converted.head.activation == Activation.SIGMOID + encoded = mock_static_model.encode(["dog", "cat"]) + assert np.allclose(converted.predict_proba(["dog", "cat"]), legacy_pipeline.predict_proba(encoded)) + + +def test_convert_legacy_pipeline_identity(mock_static_model: StaticModel) -> None: + """Test converting a legacy regressor (projector) pipeline.""" + rng = np.random.RandomState(0) + X = rng.randn(30, mock_static_model.dim) + y = rng.randn(30, 5) + mlp = MLPRegressor(hidden_layer_sizes=(8,), max_iter=1, random_state=0).fit(X, y) + legacy_pipeline = make_pipeline(mlp) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + converted = convert_legacy_pipeline(temp_dir) + + assert converted.head.activation == Activation.IDENTITY + assert converted.classes_ is None + encoded = mock_static_model.encode(["dog", "cat"]) + assert np.allclose(converted.predict(["dog", "cat"]), legacy_pipeline.predict(encoded)) + + +def test_convert_legacy_pipeline_file_gone(mock_static_model: StaticModel) -> None: + """Test that a missing pipeline.skops file raises a clear error.""" + with TemporaryDirectory() as temp_dir: + mock_static_model.save_pretrained(temp_dir) + with pytest.raises(FileNotFoundError): + convert_legacy_pipeline(temp_dir) + + +def test_convert_legacy_pipeline_missing_dependencies(monkeypatch: pytest.MonkeyPatch) -> None: + """Test that a helpful error is raised when scikit-learn/skops aren't installed.""" + monkeypatch.setitem(sys.modules, "skops", None) + monkeypatch.setitem(sys.modules, "skops.io", None) + + with pytest.raises(ImportError, match="scikit-learn"): + convert_legacy_pipeline("some/path") + + +def test_from_pretrained_legacy_fallback_local(mock_static_model: StaticModel) -> None: + """Test that from_pretrained falls back to a local legacy pipeline.skops file, with a warning.""" + rng = np.random.RandomState(0) + X = rng.randn(30, mock_static_model.dim) + y = np.array(["a", "b", "c"] * 10) + mlp = MLPClassifier(hidden_layer_sizes=(8,), max_iter=1, random_state=0).fit(X, y) + legacy_pipeline = make_pipeline(mlp) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + with pytest.warns(UserWarning, match="legacy"): + loaded = StaticModelPipeline.from_pretrained(temp_dir) + + assert loaded.head.activation == Activation.SOFTMAX + encoded = mock_static_model.encode(["dog", "cat"]) + assert loaded.predict(["dog", "cat"]).tolist() == legacy_pipeline.predict(encoded).tolist() + + +def test_from_pretrained_legacy_fallback_hub(mock_static_model: StaticModel) -> None: + """Test that from_pretrained falls back to a hub-downloaded legacy pipeline, with a warning.""" + rng = np.random.RandomState(0) + X = rng.randn(30, mock_static_model.dim) + y = rng.randn(30, 4) + mlp = MLPRegressor(hidden_layer_sizes=(8,), max_iter=1, random_state=0).fit(X, y) + legacy_pipeline = make_pipeline(mlp) + + with TemporaryDirectory() as temp_dir: + mock_static_model.save_pretrained(temp_dir) + pipeline_skops_path = os.path.join(temp_dir, "pipeline.skops") + skops.io.dump(legacy_pipeline, pipeline_skops_path) + downloaded_model = StaticModel.from_pretrained(temp_dir) + + def _fake_download(repo_id: str, filename: str, token: str | None = None) -> str: + if filename == "head.safetensors": + raise EntryNotFoundError("no head.safetensors") + return pipeline_skops_path + + with ( + patch("model2vec.inference.model.huggingface_hub.hf_hub_download", side_effect=_fake_download), + patch("model2vec.inference.model.StaticModel.from_pretrained", return_value=downloaded_model), + pytest.warns(UserWarning, match="legacy"), + ): + loaded = StaticModelPipeline.from_pretrained("fake/repo-id") + + assert loaded.head.activation == Activation.IDENTITY + encoded = mock_static_model.encode(["dog", "cat"]) + assert np.allclose(loaded.predict(["dog", "cat"]), legacy_pipeline.predict(encoded)) + + +def test_convert_legacy_pipeline_untrusted_type(mock_static_model: StaticModel) -> None: + """Test that an untrusted type in the legacy pipeline is rejected by default.""" + rng = np.random.RandomState(0) + X = rng.randn(10, mock_static_model.dim) + y = np.array(["a", "b"] * 5) + legacy_pipeline = make_pipeline(MLPClassifier(hidden_layer_sizes=(4,), max_iter=1, random_state=0).fit(X, y)) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + with patch("skops.io.get_untrusted_types", return_value=["evil.Type"]): + with pytest.raises(ValueError, match="Untrusted type"): + convert_legacy_pipeline(temp_dir) + + +def test_convert_legacy_pipeline_unsupported_head(mock_static_model: StaticModel) -> None: + """Test that a non-MLP legacy head raises a clear error.""" + legacy_pipeline = make_pipeline(StandardScaler()) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + with pytest.raises(ValueError, match="Unsupported legacy head type"): + convert_legacy_pipeline(temp_dir) + + +def test_convert_legacy_pipeline_unsupported_activation(mock_static_model: StaticModel) -> None: + """Test that a non-relu hidden activation raises a clear error.""" + rng = np.random.RandomState(0) + X = rng.randn(10, mock_static_model.dim) + y = np.array(["a", "b"] * 5) + mlp = MLPClassifier(hidden_layer_sizes=(4,), activation="tanh", max_iter=1, random_state=0).fit(X, y) + legacy_pipeline = make_pipeline(mlp) + + with TemporaryDirectory() as temp_dir: + _dump_legacy_pipeline(temp_dir, mock_static_model, legacy_pipeline) + with pytest.raises(ValueError, match="Unsupported hidden activation"): + convert_legacy_pipeline(temp_dir) + + +def test_save_pipeline_base_model_name_variants(mock_static_model: StaticModel) -> None: + """Test that _save_pipeline resolves both list- and str-valued base_model_name.""" + head = MLPHead(layers=[Layer(weight=np.eye(3), bias=np.zeros(3))], activation=Activation.IDENTITY) + + for base_model_name, expected in [(["a/b", "c/d"], "a/b"), ("a/b", "a/b")]: + model = StaticModel( + vectors=mock_static_model.embedding, + tokenizer=mock_static_model.tokenizer, + base_model_name=base_model_name, # type: ignore[arg-type] + ) + pipeline = StaticModelPipeline(model, head) + with TemporaryDirectory() as temp_dir: + pipeline.save_pretrained(temp_dir) + readme = (Path(temp_dir) / "README.md").read_text() + assert expected in readme From f693e2a0cc66d8319ceb6fc6138ddc20ab73a2cf Mon Sep 17 00:00:00 2001 From: stephantul Date: Wed, 5 Aug 2026 10:05:00 +0200 Subject: [PATCH 4/4] add 'tests' extra so skops and scikit-learn get installed in CI --- Makefile | 2 +- pyproject.toml | 1 + uv.lock | 40 +++++++++++++++++++++++++++++++++++++++- 3 files changed, 41 insertions(+), 2 deletions(-) diff --git a/Makefile b/Makefile index c067b773..cc1db1a1 100644 --- a/Makefile +++ b/Makefile @@ -8,7 +8,7 @@ install: uv run pre-commit install install-no-pre-commit: - uv pip install ".[dev,distill,inference,train,onnx,quantization,integration]" + uv pip install ".[dev,distill,train,onnx,quantization,integration,tests]" install-base: uv sync --extra dev diff --git a/pyproject.toml b/pyproject.toml index cc6c2fd1..5a097813 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -63,6 +63,7 @@ onnx = ["onnx", "torch"] train = ["torch"] quantization = ["scikit-learn"] integration = ["mteb"] +tests = ["scikit-learn", "skops"] [project.urls] "Homepage" = "https://github.com/MinishLab" diff --git a/uv.lock b/uv.lock index 0658fe54..7bb99d93 100644 --- a/uv.lock +++ b/uv.lock @@ -1267,6 +1267,11 @@ quantization = [ { name = "scikit-learn", version = "1.7.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, { name = "scikit-learn", version = "1.8.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, ] +tests = [ + { name = "scikit-learn", version = "1.7.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" }, + { name = "scikit-learn", version = "1.8.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" }, + { name = "skops" }, +] train = [ { name = "torch" }, ] @@ -1287,8 +1292,10 @@ requires-dist = [ { name = "safetensors" }, { name = "scikit-learn", marker = "extra == 'distill'" }, { name = "scikit-learn", marker = "extra == 'quantization'" }, + { name = "scikit-learn", marker = "extra == 'tests'" }, { name = "setuptools", marker = "extra == 'dev'" }, { name = "skeletoken", marker = "extra == 'distill'", specifier = ">=0.4.0,<0.5.0" }, + { name = "skops", marker = "extra == 'tests'" }, { name = "tokenizers", specifier = ">=0.20" }, { name = "torch", marker = "extra == 'distill'" }, { name = "torch", marker = "extra == 'onnx'" }, @@ -1296,7 +1303,7 @@ requires-dist = [ { name = "tqdm" }, { name = "transformers", marker = "extra == 'distill'", specifier = "<5.4.0" }, ] 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